Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61380 475 / 8e-162 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G46790 126 / 5e-31 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 125 / 8e-31 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G24470 127 / 1e-30 APRR5 pseudo-response regulator 5 (.1) AT5G02810 114 / 3e-26 APRR7, PRR7 pseudo-response regulator 7 (.1) AT4G31920 91 / 3e-19 GARP ARR10 response regulator 10 (.1) AT4G16110 91 / 5e-19 GARP ARR2 response regulator 2 (.1) AT3G16857 91 / 6e-19 GARP ARR1 response regulator 1 (.1.2) AT2G25180 91 / 7e-19 GARP ARR12 response regulator 12 (.1) AT1G67710 90 / 7e-19 GARP ARR11 response regulator 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G002300 [exp] 130 / 1e-31 AT5G24470 301 / 1e-92 pseudo-response regulator 5 (.1) Potri.012G005900 [exp] 129 / 2e-31 AT5G24470 305 / 9e-94 pseudo-response regulator 5 (.1) Potri.014G106000 [exp] 121 / 9e-29 AT5G24470 271 / 3e-81 pseudo-response regulator 5 (.1) Potri.002G179800 [exp] 121 / 9e-29 AT5G24470 269 / 2e-80 pseudo-response regulator 5 (.1) Potri.010G215200 [exp] 119 / 6e-28 AT5G02810 441 / 2e-144 pseudo-response regulator 7 (.1) Potri.008G046200 [exp] 117 / 2e-27 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1) Potri.010G053100 [exp] 93 / 9e-20 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 93 / 9e-20 AT1G67710 383 / 5e-127 response regulator 11 (.1) Potri.010G105600 [exp] 90 / 1e-18 AT4G16110 376 / 2e-121 response regulator 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021629 [exp] 611 / 0 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10000566 [exp] 610 / 0 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 580 / 0 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 580 / 0 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10023229 [exp] 132 / 5e-33 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10008879 [exp] 133 / 1e-32 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1) Lus10015571 [exp] 128 / 3e-31 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10032934 [exp] 127 / 8e-31 AT5G24470 356 / 2e-114 pseudo-response regulator 5 (.1) Lus10023230 [exp] 112 / 6e-26 AT5G24470 300 / 2e-92 pseudo-response regulator 5 (.1) Lus10008878 [exp] 112 / 1e-25 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.015G061900.5 pacid=42775093 polypeptide=Potri.015G061900.5.p locus=Potri.015G061900 ID=Potri.015G061900.5.v4.1 annot-version=v4.1 ATGGAGGGAGAGGTAGATGAGCAAAATTTGAGCGGGCACATGAAGGAGAGTGGTAATGGTAAAAGTGTAGGAGGAGGAGGAGCAGGAGATGGTTTTGTTG ATAGAAGCAAAGTGAGGATTTTGCTATGTGATAATGATGCTAAGAGCTCTCAGGAGGTTTTCACTCTCCTTTTGAAGTGCTCTTATCAAGTTACATCAGT GAGATCGGCTAGGCAGGTGATTGATGCACTAAATGCTGAGGGGCCTGAAATCGACATTATACTTTCTGAAGTTGACATTCCAATGACCAAGGGCATGAAA ATGTTGAAGTATATCATGCGGGATAAAGACTTGCGGCGTATTCCTGTGATCATGATGTCGGCACAGGATGAGGTCTCAATTGTTGTAAAGTGCTTGAGAC TTGGAGCGGCAGACTATCTTGTAAAGCCTTTACGTACTAATGAGCTCTTGAACCTGTGGACACACATGTGGAGAAGGCGGCACATGCTTGGATTGGCGGA GAAGAACATCTTGAACTATGACTTTGATCCGGTTGCATCAGATCCTAGTGATGCTAATACAAACAGTACTACGCTGTTTTCAGATGACACGGATGACCTG TCTCGTAGGAGCACCAATCCTGAAATGGGGATGTCAACTCATCAGGAAGATGAGTCTGCTGCCGCTGCTTCTGCTTCTGCTTCTGCTGCTGCCGCCGCTG CCGAGCCTTCTCCTGGTGATCCACAGAAATATCGACCTGATGTGCCAGGGATCAGTGACCGCCGAACAGGACATTTATCTTCTGGTCCGAAGAAGAGTGA ATTGAAGATTGGCGAGTCCTCTGCCTTTTTCACTTATGTCAAACCAAGCACGGTAAAAAACAATTCCCAAGGAGTTGCTCTTATTGAGGACAATACTAAT CAAAATTTGAGGATGGAAGAGAAACTTCAAGTATGTGGCGAGCAAATGCTTAATGATGCCCATTTACAAGAAAATGGGGAGGCATTGGAAATCCACTCAC AAGTAGATGACTTCCGTAGCAGTTCTAGCATTCCTGACTCTCTCTCTCTGGAAAGATCTTGCACCCCTCCTATGTCAAGAGAATTTCCCCAAAGAAATTT CAAGGATGATCGGGTGCTTATGCATCAAACGAATGAACCTCAATTAGATGCGTCAAGTTTATCAACACAAAGTGTGTATCCATATTTTATGTCAGGTGTT GTAAATCAAGTTATGATGTCATCATCAGCACAACTCTATCAAAAGAACCTGCATGAGTTGCAAAGCCTTGGAACTTCAGCCATGCTTCCTGGATACAATC ATCTTCCCCAATGTCCACCTCACATGTCTGGGATGGCATCATTTCCTTATTACCCTGTTAGTATATGCTTACAACCTGGTCAAATGCCTACCACTCCGTC ATGGCCATCATTTGGATCTTCGACGTCAGCTGATGTGAAACTAAATAAAGTAGATAGAAGAGAGGCAGCATTAAATAAGTTTAGACAGAAAAGAAAAGAG CGCTGTTTTGATAAGAAGATAAGGTATGTTAATCGGAAAAAACTTGCTGAAAGGAGGCCTCGAGTGCGGGGACAGTTTGTGAGGAAGGTAAATGGTGTAA ATGTGGATCTCAATGGGCAACCTGCTTCTACGGATTATGATGAAGATGAAGAAGAGGACGGTGATGAGCAAGCATCAAGGGATTCTTCTCCTGAGGATGA TGCTTCAGGATCTTAA
AA sequence Show only first row Show all	>Potri.015G061900.5 pacid=42775093 polypeptide=Potri.015G061900.5.p locus=Potri.015G061900 ID=Potri.015G061900.5.v4.1 annot-version=v4.1 MEGEVDEQNLSGHMKESGNGKSVGGGGAGDGFVDRSKVRILLCDNDAKSSQEVFTLLLKCSYQVTSVRSARQVIDALNAEGPEIDIILSEVDIPMTKGMK MLKYIMRDKDLRRIPVIMMSAQDEVSIVVKCLRLGAADYLVKPLRTNELLNLWTHMWRRRHMLGLAEKNILNYDFDPVASDPSDANTNSTTLFSDDTDDL SRRSTNPEMGMSTHQEDESAAAASASASAAAAAAEPSPGDPQKYRPDVPGISDRRTGHLSSGPKKSELKIGESSAFFTYVKPSTVKNNSQGVALIEDNTN QNLRMEEKLQVCGEQMLNDAHLQENGEALEIHSQVDDFRSSSSIPDSLSLERSCTPPMSREFPQRNFKDDRVLMHQTNEPQLDASSLSTQSVYPYFMSGV VNQVMMSSSAQLYQKNLHELQSLGTSAMLPGYNHLPQCPPHMSGMASFPYYPVSICLQPGQMPTTPSWPSFGSSTSADVKLNKVDRREAALNKFRQKRKE RCFDKKIRYVNRKKLAERRPRVRGQFVRKVNGVNVDLNGQPASTDYDEDEEEDGDEQASRDSSPEDDASGS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Potri.015G061900 [exp]	0	1
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	4.69	0.8632
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G124677 [exp]	4.89	0.8916
AT1G32690			unknown protein		Potri.001G141600 [exp]	5.09	0.8911
AT4G34890		ATXDH1	xanthine dehydrogenase 1 (.1)		Potri.009G054600 [exp]	8.48	0.8851
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.013G008300 [exp]	8.94	0.8719
AT3G03560			unknown protein		Potri.013G073400 [exp]	17.83	0.8320
AT2G30070		ATKUP1, ATKT1P,...	POTASSIUM UPTAKE TRANSPORTER 1...		Potri.003G148200 [exp]	18.54	0.8347
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Potri.005G126000 [exp]	18.97	0.8507
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036100 [exp]	21.67	0.8331
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Potri.008G135200 [exp]	26.32	0.8406	Pt-FKF1.2

Compare expression of checked genes

Potri.015G061900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.