Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61390 543 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT5G07710 521 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT1G74390 489 / 5e-170 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT4G39810 274 / 2e-89 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G079100 [exp] 280 / 1e-91 AT4G39810 344 / 3e-120 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.007G088500 [exp] 277 / 8e-91 AT4G39810 311 / 3e-108 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015719 [exp] 643 / 0 AT5G61390 541 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10019078 [exp] 626 / 0 AT5G61390 528 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10000567 [exp] 575 / 0 AT5G61390 480 / 8e-167 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022503 [exp] 263 / 1e-84 AT4G39810 305 / 2e-104 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10016807 [exp] 262 / 4e-84 AT4G39810 297 / 2e-101 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G062000.1 pacid=42775048 polypeptide=Potri.015G062000.1.p locus=Potri.015G062000 ID=Potri.015G062000.1.v4.1 annot-version=v4.1 ATGGAAAACAAAACAGAGATAGCTTTCTTCGATGTTGAAACCACGGTCCCGACCCGACCCGGCCAGGGGTATGCTATACTTGAATTCGGGGCCATCCTTG TCTGCCCCCAGAAGCTAGAAGAGATCAGGAGCTACTCGACCTTGGTCCGACCCTCCAACCCGAAGCTCATATCTTCCTTGTCCGTACGGTGTAACGGCAT CATACCAGAAGCTGTGGTTTCAGCACCGTCCTTCGCTGACATTGCTGACACGGTCTACGACATCCTCCATGGGAGGATATGGGCGGGCCATAATATAGTC AGATTTGATTGTGTGCGAATAAGAGAGGCGTTTGCGGAGATTGGAAGGGCAGCACCAGAGCCAAAGGGGACTATTGACTCGTTAGCATTATTGACTCAGA AGTTTGGAAGGAGAGCTGGCAACATGAAGATGGCAAGCCTTGCAACTTATTTTGGGCTTGGAAACCAAACACATAGGAGTTTAGATGATGTAAGAATGAA TGTTGAGGTTCTTAAGCATTGTGCTACTGTCCTATTCCTGGAATCAAGCCTCCCAGACGCATTTCCAGAAAACCATTGGGTTTCCCCTAATGCTATCACA AGAAGTCGTAGAAATGGAAAATCCCCAGTCCTAAACAAGAATTCCCCGTCTTCGAGTTCACACGTTAAAAGCACCCCTGCCCTGTCTCCTGAAAATGATA GAACTGAGGAAAAGCGTCCAGTCTTTTCTCTTCTCACAAGCAATACTGCTGAGGCCCAATATTCTGTTGCATCTAATACAGCTCATCCTGATACATTTGA CATGGTCGCACTTGGCAATGAAATGAATGCTGCCTCCTTTCAACCAGATGTCGCCATGGAGGAAAACCCAATACTACAGCCTCCTGAGATGCCTTCTACA GTGACTGTCCCTGAAAGTTGCAGTGACGTTTTGGGTTTCTTAGAGCTTGATGAAGTTTCTCTTTCTTCTATTAGAGCATTTCATGTCCCGTTCTTTCGAG GGAGTCATAGAATCAAATTATTTTACGAGGGGGCCATTTTGCAGCTTCGCTGTCCTCGGTTGAGGATACGGTTTGGACTAAGTACGAAGTTTTCTGATCA TGCAGGCCGGCCACGGTTGAGTTTTGTGGTTGATGCATCTCCAAGTCTATGTGATGTTCTTGATACATGTGAGAGCATTGTGCGGAAAGTTTGTGCAGAT TCGGATTGTAGTTCTGATTGGAGGAGTGTTGTTACCAGAAAACAGGGCTTTGTCAACAACCCTACCGTGAGATTGAACATACCTACTGCAGTAAATGGGG ATGTTGCTCAATATGCAACGGATATGTATCTGAAAGAACCATCTGGAACCACACAAAAGCTCATATTCAGTAAGTTTGATGCTGCCGAGCTGGATACCTG GTTCAGACCAGGGACCTTTGTCGATGCATACTTGTCCTTGGATCCATACGACTATCAGCAGACTTCTGGCATCCGATTAGTGGCAAATAAATTAATCATC CATAATGAGTGA
AA sequence Show only first row Show all	>Potri.015G062000.1 pacid=42775048 polypeptide=Potri.015G062000.1.p locus=Potri.015G062000 ID=Potri.015G062000.1.v4.1 annot-version=v4.1 MENKTEIAFFDVETTVPTRPGQGYAILEFGAILVCPQKLEEIRSYSTLVRPSNPKLISSLSVRCNGIIPEAVVSAPSFADIADTVYDILHGRIWAGHNIV RFDCVRIREAFAEIGRAAPEPKGTIDSLALLTQKFGRRAGNMKMASLATYFGLGNQTHRSLDDVRMNVEVLKHCATVLFLESSLPDAFPENHWVSPNAIT RSRRNGKSPVLNKNSPSSSSHVKSTPALSPENDRTEEKRPVFSLLTSNTAEAQYSVASNTAHPDTFDMVALGNEMNAASFQPDVAMEENPILQPPEMPST VTVPESCSDVLGFLELDEVSLSSIRAFHVPFFRGSHRIKLFYEGAILQLRCPRLRIRFGLSTKFSDHAGRPRLSFVVDASPSLCDVLDTCESIVRKVCAD SDCSSDWRSVVTRKQGFVNNPTVRLNIPTAVNGDVAQYATDMYLKEPSGTTQKLIFSKFDAAELDTWFRPGTFVDAYLSLDPYDYQQTSGIRLVANKLII HNE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61390			Polynucleotidyl transferase, r...		Potri.015G062000 [exp]	0	1
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.006G151800 [exp]	2.00	0.8203	NFC905,ATMSI4.4
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Potri.012G099600 [exp]	4.69	0.8367
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.005G076400 [exp]	6.63	0.7828
AT5G23950			Calcium-dependent lipid-bindin...		Potri.012G144600 [exp]	7.14	0.7905
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Potri.006G045800 [exp]	11.40	0.8341
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Potri.016G096400 [exp]	11.61	0.8137
AT3G47500	DOF	CDF3, AtDof3,3	cycling DOF factor 3 (.1)		Potri.013G066700 [exp]	12.64	0.8032
AT5G54860			Major facilitator superfamily ...		Potri.011G137300 [exp]	14.14	0.7653
AT3G05700			Drought-responsive family prot...		Potri.014G125500 [exp]	14.14	0.8088
AT5G19750			Peroxisomal membrane 22 kDa (M...		Potri.006G032500 [exp]	14.96	0.8125

Compare expression of checked genes

Potri.015G062000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.