Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AR401.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66680 414 / 4e-145 AR401 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34360 50 / 5e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G60910 47 / 1e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G068550 [exp] 66 / 1e-13 AT1G66680 56 / 1e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G261000 [exp] 56 / 1e-08 AT3G60910 387 / 2e-137 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.009G055600 [exp] 55 / 2e-08 AT3G60910 378 / 1e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G317700 [exp] 41 / 0.001 AT2G31740 886 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G068600 [exp] 0 / 1 AT1G66680 0 / 1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017619 [exp] 474 / 7e-169 AT1G66680 471 / 1e-167 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033577 [exp] 432 / 3e-151 AT1G66680 385 / 3e-132 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019750 [exp] 48 / 5e-06 AT3G60910 394 / 3e-140 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10016376 [exp] 44 / 7e-05 AT3G60910 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G062400.1 pacid=42776246 polypeptide=Potri.015G062400.1.p locus=Potri.015G062400 ID=Potri.015G062400.1.v4.1 annot-version=v4.1 ATGACAGGAATTCGGTTACAACAAGAAGAATCAGCTGACCTAACGCAAATCAGAGCTGCTGGTACCGGCGGCGATCTGGTGTCGGACGACGATAGGTCTG TGGCGGCGGACTCTTGGTCAATTAAGAGTGATTATGGGAGTACTCTCGATGACGATCAGCGCCATGCTGATGCGGCCGAGGCTCTCTCCGCTGCCGCTAA CTGTCGCGCCGCTTCTGATTACAGTTCAGACAAGGAAGAACTGGATGCTGAAGGCGTGGCTTCCATGTTAGGTCTACAGAGTTATTGGGATGCTGCCTAT GCTGATGAGTTGGCAAACTTCCATGAACATGGTCATGCTGGTGAAGTTTGGTTTGGGGCTGATGTCATGGATGTCATTGCTTCTTGGACAAAAGGCCTGT GCTTTGAAATTTCTCAAGGTTGCATTCCTAATCATGTTGATGATATCAAGTCTGAAACTGTTGAAGAGAGTGATAAATATCTGTCCAGCTGGAGTGTACT TGACATCGGGACCGGCAATGGTTTACTCCTTCATGAACTTGCTAAGCAGGGGTTTTCTGATTTAACTGGAGTTGATTACAGTGAAGGGGCCATTAACCTG GCGCGTAGGCTTGCTGATCGTGATGGGTTTTCTAATATCAATCTTCTGGTTGATGATGTTCTTGAGACAAAATTAAACAGACAGTTTCAGCTGGTCATGG ATAAAGGGACTTTAGATGCCATTGGATTGCATCCTGACGGTGCTATCAAAAGGATCATGTACTGGGAATCAGTTTCAAAGTTGGTTGCAGTTGGTGGAAT CTTGGTGATTACATCGTGTAACAATACAAAAGACGAATTGGTGCAAGAAGTAGAAAATTTCAATCAAAGGAGGATTGATGTATCCCTGGAATCAGAGTCC ATGAAGGGCCATGAAGCATCCAGAGATCCTCCATTTCGATACCTCAATCATGTCCGAACATATCCTACCTTCATGTTTGGTGGATCAGTGGGATCACGTG TTGCCACCGTGGCATTTCTTCGAAACTGA
AA sequence Show only first row Show all	>Potri.015G062400.1 pacid=42776246 polypeptide=Potri.015G062400.1.p locus=Potri.015G062400 ID=Potri.015G062400.1.v4.1 annot-version=v4.1 MTGIRLQQEESADLTQIRAAGTGGDLVSDDDRSVAADSWSIKSDYGSTLDDDQRHADAAEALSAAANCRAASDYSSDKEELDAEGVASMLGLQSYWDAAY ADELANFHEHGHAGEVWFGADVMDVIASWTKGLCFEISQGCIPNHVDDIKSETVEESDKYLSSWSVLDIGTGNGLLLHELAKQGFSDLTGVDYSEGAINL ARRLADRDGFSNINLLVDDVLETKLNRQFQLVMDKGTLDAIGLHPDGAIKRIMYWESVSKLVAVGGILVITSCNNTKDELVQEVENFNQRRIDVSLESES MKGHEASRDPPFRYLNHVRTYPTFMFGGSVGSRVATVAFLRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G66680		AR401	S-adenosyl-L-methionine-depend...		Potri.015G062400 [exp]	0	1	Pt-AR401.1
AT5G47770		FPS1	farnesyl diphosphate synthase ...		Potri.006G003400 [exp]	8.48	0.7595	Pt-FPS1.2
AT4G38630		ATMCB1, MBP1, A...	MULTIUBIQUITIN-CHAIN-BINDING P...		Potri.009G133000 [exp]	8.66	0.7562
AT3G52990			Pyruvate kinase family protein...		Potri.006G117400 [exp]	8.83	0.7516
AT3G22110		PAC1	20S proteasome alpha subunit C...		Potri.006G008800 [exp]	9.69	0.7713	Pt-PAC1.1
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Potri.001G420700 [exp]	11.13	0.6848
AT2G44100		AT-GDI1, ATGDI1	guanosine nucleotide diphospha...		Potri.017G001200 [exp]	11.22	0.7708	Pt-GDI.1
AT1G80510			Transmembrane amino acid trans...		Potri.003G011900 [exp]	11.66	0.6806
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	18.97	0.7449
AT2G03550			alpha/beta-Hydrolases superfam...		Potri.009G105000 [exp]	23.68	0.7285
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	25.92	0.6595	MMK3.1

Compare expression of checked genes

Potri.015G062400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.