Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18810 100 / 5e-23 phytochrome kinase substrate-related (.1) AT2G02950 89 / 6e-19 PKS1 phytochrome kinase substrate 1 (.1) AT1G14280 66 / 2e-11 PKS2 phytochrome kinase substrate 2 (.1) AT5G04190 62 / 4e-10 PKS4 phytochrome kinase substrate 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G090000 [exp] 44 / 0.0002 AT5G04190 75 / 3e-14 phytochrome kinase substrate 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023598 [exp] 169 / 8e-48 AT2G02950 106 / 3e-25 phytochrome kinase substrate 1 (.1) Lus10024228 [exp] 166 / 2e-46 AT2G02950 107 / 2e-25 phytochrome kinase substrate 1 (.1) Lus10036746 [exp] 115 / 4e-28 AT2G02950 136 / 1e-35 phytochrome kinase substrate 1 (.1) Lus10037181 [exp] 107 / 2e-25 AT1G14280 140 / 2e-37 phytochrome kinase substrate 2 (.1) Lus10030480 [exp] 81 / 3e-16 AT2G02950 120 / 4e-30 phytochrome kinase substrate 1 (.1) Lus10012831 [exp] 71 / 5e-13 AT1G14280 122 / 7e-31 phytochrome kinase substrate 2 (.1) Lus10040995 [exp] 45 / 0.0001 AT5G04190 117 / 2e-28 phytochrome kinase substrate 4 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G062600.1 pacid=42775742 polypeptide=Potri.015G062600.1.p locus=Potri.015G062600 ID=Potri.015G062600.1.v4.1 annot-version=v4.1 ATGGACAGCAAGAGCCCTGATCTTCGCGAAGCCTCGTTTTCTTCTTATCTCACCCAGCAAGAAGACAATTTTGTACTTAAGCTGACAGATCAGTCGGTGC AGTTTACCCATCCTGCCAAAATCACTTCAAGCCAAGAGATTTCCCTCCCTGCCAGGTCAGAGAGGACTAAAGCTGAAGAGGGGGAAATCAGCGTCTTTGG CGCGGAGAGATACTTCAATATGAAACTGGATGATGATAGTCCAAGAATCGTTGACAATATTAATGCTGGAAAGTACGTGCATGAGAAAGAATACCCGGTT GATCGACAACGGATGAGACCGAGAAGCAGATTAGGAACTCCAAGTGTGAGTTCTGAAGCAAGTTGGAACAGTAAAAAAGCTTTGCTACCAAATACCCTGA GAAATTCATCTCCAACCAGGCACCAGAAAGTCAATGAAAGATGGTTCTTTCCAGGCTTTGCCTGCAATGGCTCTTGTTCAGACAAGAAATCTGTTTATAC GGATAAAAATATTGGTCACAGAGAGACTCGTGGAAAAGAGCTCAGGAGGGAATCTGCTCGCAATCCTATCGGACTGGAAGGGACTAGAAAGCAGTCTCAA TCAAGCCTAATCCAGGTGAAAGATGAGTTACACAGCCCGAGCTTTAAAAGAACGAGTGTTGGTTCAAAAAGAAGAGAGTACTTTGTGTTGCCGTGTGTTA ATTCCGGGGTGCAAAACTTGAATCTTAAAGGAGGGGAGCAGAAGATCATAGAAGACGACCCACGAATATCCCTAGAGGTGTTCGGCTCCCATTTGCTTAA AAAGGAAGATATAGCACTGAATCTGGAGAGAAAGCTGTCTGTGCTAACATGGGATGCCATCCCAAAATCCCCACACCTCCCACCCACCTCAAGCAGTAGC GGCCAGATGTATGAAGATATTGAAAGCGATGGCAGTTCGGATCTGTTCGAGATTGAGAACCTATCTGGAAGTTCACATCTACAGCCTATATTCACCAAGC AAACATCTGATGGCATGTCTAGCTGTATGACACCAACCAGCCGGTACTATGAGCCAAGTGAGAGCAGCATTGAATGGAGTGTAGTCACCGCCAGTGCTGC TGATTTCTCAGCTGTTTCAGTGGACTATGATGAAAAGATGCTGGCTGAAAATAGCATAATTAATCCCTATTTAGCATCCACAGTGCCCAGAAGAAGCCGC CCAAATGGCCTATTGGGATGCAATAGTCAGAAAGCAGTAGATGTTGCTGAAACTGCACACAAGAGAAACGACAAGGCGAAGTCTCACTCGCAGCAGCTTC GAAGGACAGACGCACCCATCCCACTGCGGAATTTACAGGCTCATGAGAATATGGTGAAAGATCCTGATTTCCCTTGA
AA sequence Show only first row Show all	>Potri.015G062600.1 pacid=42775742 polypeptide=Potri.015G062600.1.p locus=Potri.015G062600 ID=Potri.015G062600.1.v4.1 annot-version=v4.1 MDSKSPDLREASFSSYLTQQEDNFVLKLTDQSVQFTHPAKITSSQEISLPARSERTKAEEGEISVFGAERYFNMKLDDDSPRIVDNINAGKYVHEKEYPV DRQRMRPRSRLGTPSVSSEASWNSKKALLPNTLRNSSPTRHQKVNERWFFPGFACNGSCSDKKSVYTDKNIGHRETRGKELRRESARNPIGLEGTRKQSQ SSLIQVKDELHSPSFKRTSVGSKRREYFVLPCVNSGVQNLNLKGGEQKIIEDDPRISLEVFGSHLLKKEDIALNLERKLSVLTWDAIPKSPHLPPTSSSS GQMYEDIESDGSSDLFEIENLSGSSHLQPIFTKQTSDGMSSCMTPTSRYYEPSESSIEWSVVTASAADFSAVSVDYDEKMLAENSIINPYLASTVPRRSR PNGLLGCNSQKAVDVAETAHKRNDKAKSHSQQLRRTDAPIPLRNLQAHENMVKDPDFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18810			phytochrome kinase substrate-r...		Potri.015G062600 [exp]	0	1
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.006G186800 [exp]	3.31	0.9654	Pt-ALDH11.2
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125351 [exp]	4.89	0.9548
					Potri.018G012401 [exp]	5.91	0.9380
AT2G37710		RLK	receptor lectin kinase (.1)		Potri.006G088648 [exp]	6.70	0.9452
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125151 [exp]	8.36	0.9539
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.002G145100 [exp]	9.59	0.9602
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.019G007600 [exp]	11.22	0.9456
AT1G48350		EMB3105	EMBRYO DEFECTIVE 3105, Ribosom...		Potri.010G005000 [exp]	14.49	0.9476
AT1G78270		ATUGT85A4	UDP-glucosyl transferase 85A4 ...		Potri.016G020201 [exp]	16.61	0.9471
AT1G08465	YABBY	YAB2	YABBY2, Plant-specific transcr...		Potri.001G214700 [exp]	16.70	0.9392

Compare expression of checked genes

Potri.015G062600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.