Plant FIBer expression Database

ATEB1.4 (Potri.015G062900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ATEB1.4
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62500 421 / 4e-150 ATEB1B end binding protein 1B (.1)
AT3G47690 417 / 6e-149 ATEB1A, ATEB1H2 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1)
AT5G67270 312 / 1e-106 ATEB1C, ATEB1H1 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G069400
[exp]
511 / 0 AT3G47690 422 / 6e-151 ATEB1-HOMOLOG2, ARABIDOPSIS THALIANA MICROTUBULE END BINDING PROTEIN EB1A, microtubule end binding protein EB1A (.1)
Potri.005G142200
[exp]
337 / 3e-116 AT5G67270 442 / 5e-157 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Potri.007G048700
[exp]
333 / 6e-115 AT5G67270 436 / 8e-155 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023606
[exp]
437 / 1e-156 AT5G62500 397 / 6e-141 end binding protein 1B (.1)
Lus10024235
[exp]
425 / 1e-151 AT5G62500 388 / 1e-136 end binding protein 1B (.1)
Lus10019316
[exp]
309 / 3e-105 AT5G67270 402 / 4e-141 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
Lus10011508
[exp]
298 / 7e-101 AT5G67270 400 / 1e-140 ATEB1-HOMOLOG1, MICROTUBULE END BINDING PROTEIN 1, end binding protein 1C (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0188 CH PF00307 CH Calponin homology (CH) domain
CL0188 PF03271 EB1 EB1-like C-terminal motif
Representative CDS sequence
>Potri.015G062900.1 pacid=42775036 polypeptide=Potri.015G062900.1.p locus=Potri.015G062900 ID=Potri.015G062900.1.v4.1 annot-version=v4.1
ATGGCGTCGAATATAGGGATGATGGACAGTGCGTATTTTGTCGGGAGGAATGAGATATTAACATGGATCAACAATAGGCTTCAGCTCAACCTCTCTCGTA
TTGAGGAGGCTGCTTCCGGTGCTGTGCAGTGTCAGATGATGGACATGACTTATCCAGGAGTTGTACCGATGCACAAGGTGAATTTTGATGCAAAGACAGA
ATATGATATGATCCAAAATTACAAGATTCTGCAAGATATATTTAACAAGTTAAAAATTGAGAAGCATCTTGAAGTTAACAGGCTTGTTAAAGGAAGGCCA
TTGGACAACTTGGAATTCTTACAGTGGCTGAAACGATACTGTGACTCTGTGAATGGTGGCATCATGAATGAGAACTATAACCCATTGGAACGGAGAAGTA
AGGGTGGGAGGGACCGTAACTCTAGGGGTTCTCAGAAGACCACAAAATCGCAGCAAGCAAGCAACATGCATAACTCTTCCTCTGGTTACACAGTTGACCT
GAACAAAATGTCTGGGCAAAAGCAAGGGAGGGGAAGTGCTGTGGTAGGTGAGGCAAATTCTTCGGAGGAGATTCAAGCTTTGTCCAAGGAGATTGCAGAT
ATGAAGCTCTCAGTGGACCTTTTGGAGAAAGAAAGAGATTTTTACTTTGCAAAGTTGCGTGATATAGAAATACTATGTCAGACTCCTGAATTGGAGGATC
TACCGGTGGTAGTTGCTATAAAAAAGATACTGTATGCTGCTGATACCAAGGAATCTGCACTTGAAGAAGCTCAGGAATACCTATCTGAAGCTATCTGTAC
TGGTGCAACTGAAGTTGAAAGTGAAGTTTGA
AA sequence
>Potri.015G062900.1 pacid=42775036 polypeptide=Potri.015G062900.1.p locus=Potri.015G062900 ID=Potri.015G062900.1.v4.1 annot-version=v4.1
MASNIGMMDSAYFVGRNEILTWINNRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKTEYDMIQNYKILQDIFNKLKIEKHLEVNRLVKGRP
LDNLEFLQWLKRYCDSVNGGIMNENYNPLERRSKGGRDRNSRGSQKTTKSQQASNMHNSSSGYTVDLNKMSGQKQGRGSAVVGEANSSEEIQALSKEIAD
MKLSVDLLEKERDFYFAKLRDIEILCQTPELEDLPVVVAIKKILYAADTKESALEEAQEYLSEAICTGATEVESEV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62500 ATEB1B end binding protein 1B (.1) Potri.015G062900
[exp]
0 1 ATEB1.4
AT1G56720 Protein kinase superfamily pro... Potri.013G003700
[exp]
3.00 0.9422
AT5G42350 Galactose oxidase/kelch repeat... Potri.002G007700
[exp]
3.16 0.9144
AT1G02180 ferredoxin-related (.1) Potri.006G220700
[exp]
4.00 0.9344
AT5G35960 Protein kinase family protein ... Potri.014G136300
[exp]
4.47 0.9237
AT1G80210 BRCC36A, AtBRCC... BRCA1/BRCA2-containing complex... Potri.001G172800
[exp]
5.09 0.9122
AT2G43420 3-beta hydroxysteroid dehydrog... Potri.007G131200
[exp]
5.91 0.9222
AT1G34780 ATAPRL4 APR-like 4 (.1.2) Potri.005G164200
[exp]
7.34 0.9196
AT4G33080 AGC (cAMP-dependent, cGMP-depe... Potri.006G224800
[exp]
8.94 0.9170
AT2G38320 TBL34 TRICHOME BIREFRINGENCE-LIKE 34... Potri.016G125500
[exp]
9.16 0.9126
AT5G01360 TBL3 TRICHOME BIREFRINGENCE-LIKE 3,... Potri.016G119100
[exp]
9.89 0.9181

Potri.015G062900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.