Plant FIBer expression Database

Potri.015G063100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G47700 872 / 0 MAG2 maigo2, RINT-1 / TIP-1 family (.1)
AT1G08400 376 / 4e-118 RINT-1 / TIP-1 family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G020600
[exp]
433 / 1e-139 AT1G08400 713 / 0.0 RINT-1 / TIP-1 family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10024240
[exp]
986 / 0 AT3G47700 922 / 0.0 maigo2, RINT-1 / TIP-1 family (.1)
Lus10023609
[exp]
976 / 0 AT3G47700 918 / 0.0 maigo2, RINT-1 / TIP-1 family (.1)
Lus10036104
[exp]
444 / 7e-144 AT1G08400 687 / 0.0 RINT-1 / TIP-1 family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04437 RINT1_TIP1 RINT-1 / TIP-1 family
Representative CDS sequence
>Potri.015G063100.1 pacid=42775068 polypeptide=Potri.015G063100.1.p locus=Potri.015G063100 ID=Potri.015G063100.1.v4.1 annot-version=v4.1
ATGGACGCATCAATCCAAATTACTCTGCCACCAGTATCGTCTCTCTCCTCCTCAACTCTTTCTTTTCTCAACAGTGAACAAGATCTCAGCCGAGCACGAA
GCTATATCGACGAGCTTCAATCTCAGTGTTTCGATTTAGACCGAACCCTAATCGACCTCAATTCCAGACTCCATTCCACTCTCCTCTCTTACGCTTCCTT
CTCCGATGGAATTCATCTCCTTTTCGATGATGCCACTTCCAAGTTGACCGATCTACGTTCCTTCACTTGCCCCCCACCGCTTTCTTCTTCTCTATCACCA
TCAGATGGACAAGGAAGGAGGGAGGAGATATTGGGCGAGGAACTACCAGCGCTGGCCAAGGAGGTGGCTCGAGTCGAAACGGTTCGGGTCTACGCGGAGA
CGGCATTGAAACTTGATACATTGGTTGGTGATATTGAGGATGCGGTATCTTCTGCAATGAACAAAAAACTAAGGAAGTATTCTTCCACACAGAGTGTAGA
AGAAATGCGCCTGCTTGCTATTGAAAGACTCGGACATTCAGAAGATGTTTTAATTTCTGTTACAGAGACACACCCTCAGTGGACAAGTCTTGTATCAGCA
GTTGACCACAGAATAGATAGGGCTCTTGCCACATTAAGACCCCAGGCAATTGCAGATCATCGATCACTTCTTGGATCCCTAGGATGGCCACCTCCACTTT
CCACTTTGACGTCCTCAAACCTTGATGCTGGAAAATCAGCTGAAGTCTCCAATCCTCTTTTCACAATGCAAGGGCTTCTTAAACAACAGTACTGTGAAAA
CTTTCTTGCTTTGTGTCACTTGCAGGAGCTGCAGTGGCGGAGAAAATCACGGCAACTTGAGGGTCACAACAGGAAAGTGGCTCTGCAGCAACCACTTTGG
GCAATCGAAGAACTTGTGAATCCTATTTCAATTGCATGCCAAAGACATTTTTCAAAGTGGATTGATAAGCCAGAATTCGTTTTTGCTCTTGTCTATAAGA
TTACCAGGGATTATGTCGACACTATGGATGAATTATTGCAACCACTGGTTGATGAAGCAAGGTTAGCGGGTTACAGTTGCAGAGAAGAATGGATTTCAGC
AATGGTAACCTCTTTAGTAACATACTTGGCAAAAGAAATATTCCCCAAGTATGTTGCTGAACTGGATGGGGAGAGCGTTAGTGGTGTACAATCAAAGGCT
AGATTTTCTTGGCTTCATCTTGTTGATCTTATGATTGCTTTTGATAAACAGATTCAGTCTCTGGTAACGCATTCTGGAATTTCGCTTTCCCTTCAGGACG
ATGGCAACCTGCAGAAGATTTCTTCTCTATCAGTCTTCTGTGATCGACCTGACTGGCTTGATATATGGGCAGAAATTGAACTTAATGACACACTTGAGAA
GCTAAAACCTGAGGTTGATGATGAGAGAAACTGGACAGCAAAAATTGAAGGTGCTCTTTTATCTGGTTTTGAAAGTTACAAATCTCCTGCAGTTTCAAGT
GCCTTTGTTCGGCGACTTTTGTTGGTTGTTGATCGATGCCGATCACTGCCTAACGCCTTTTTGAGGTCAAGGTTTCTGAAAATGGCTGGTGGGTCTATTA
CGCAACGATATTTGGATTGTTTGCTACTCAGGTGCCAGGAAGCTGAAGGACTGACTGCATTAACAGATGACAATGGATTGATCAAAGTTGCAAACTCTGT
TAATGCTGCTCACTACTTTGAATCTGTTTTGAAGGAACGGTGTGAGGACACCTTTTTTCTTGAATTGGGATTTGATCACAGAGAGCAACTGGGAATAGGG
ATTAATGATAATAGTGGTTTGGAGGGGCGAATTGATGGACCTGTTGGTTGTGTTTTTGACGAGGAGATAAAAAAGTTGGAAAATTTTAGAAAAGAGTGGG
TTGAAAGGATATCAGTTGCTGTTTTGAGGGGATTTGATGCTAGGTGTCGAGAATATATAAAAAACAGGAGGCAGTGGCAAGAAAAGGGTGAAGAAAGTTG
GACAATCTCCAAAACTTTAGTCGGGGCTCTAGATTATTTGCAAGGAAAGATGGCAGTAGCGGAAGAAAATTTGAACCGGATAGATTTTGTTGGTGCCTGG
CGAAGTTTGGCAGCGGGGGTTGACCACTTGCTTTTTAATGGCCTTTTTACGAGCATGGTGAAGTTTCATGATGCTGGTGTTGAAAGGTTTAATGGTGATA
TGGAGATTTTGTTCGGAGTATTTAGAGCTTGGTGCTTGAGGCCTGAAGCCTTCTTTCCTAAAACCAGTGATGGCTTGAAGTTGTTAACAATGAGCGAGGA
GCAGCTCCGAGATACTATCGCAGGAGGAGGGAAAAGAATGAAGGAGAACGGCATTATCCATTTGAATGTAGCAGAGGCAGAGAAGATACAAAACAAAAGA
GTATTTATGAGATAA
AA sequence
>Potri.015G063100.1 pacid=42775068 polypeptide=Potri.015G063100.1.p locus=Potri.015G063100 ID=Potri.015G063100.1.v4.1 annot-version=v4.1
MDASIQITLPPVSSLSSSTLSFLNSEQDLSRARSYIDELQSQCFDLDRTLIDLNSRLHSTLLSYASFSDGIHLLFDDATSKLTDLRSFTCPPPLSSSLSP
SDGQGRREEILGEELPALAKEVARVETVRVYAETALKLDTLVGDIEDAVSSAMNKKLRKYSSTQSVEEMRLLAIERLGHSEDVLISVTETHPQWTSLVSA
VDHRIDRALATLRPQAIADHRSLLGSLGWPPPLSTLTSSNLDAGKSAEVSNPLFTMQGLLKQQYCENFLALCHLQELQWRRKSRQLEGHNRKVALQQPLW
AIEELVNPISIACQRHFSKWIDKPEFVFALVYKITRDYVDTMDELLQPLVDEARLAGYSCREEWISAMVTSLVTYLAKEIFPKYVAELDGESVSGVQSKA
RFSWLHLVDLMIAFDKQIQSLVTHSGISLSLQDDGNLQKISSLSVFCDRPDWLDIWAEIELNDTLEKLKPEVDDERNWTAKIEGALLSGFESYKSPAVSS
AFVRRLLLVVDRCRSLPNAFLRSRFLKMAGGSITQRYLDCLLLRCQEAEGLTALTDDNGLIKVANSVNAAHYFESVLKERCEDTFFLELGFDHREQLGIG
INDNSGLEGRIDGPVGCVFDEEIKKLENFRKEWVERISVAVLRGFDARCREYIKNRRQWQEKGEESWTISKTLVGALDYLQGKMAVAEENLNRIDFVGAW
RSLAAGVDHLLFNGLFTSMVKFHDAGVERFNGDMEILFGVFRAWCLRPEAFFPKTSDGLKLLTMSEEQLRDTIAGGGKRMKENGIIHLNVAEAEKIQNKR
VFMR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G47700 MAG2 maigo2, RINT-1 / TIP-1 family ... Potri.015G063100
[exp]
0 1
AT5G64070 PI-4KBETA1, PI4... phosphatidylinositol 4-OH kina... Potri.007G109000
[exp]
6.16 0.7574
AT1G24560 unknown protein Potri.010G049400
[exp]
7.74 0.7214
AT5G13250 RING finger protein (.1) Potri.003G164800
[exp]
16.97 0.7217
AT1G02040 C2H2ZnF C2H2-type zinc finger family p... Potri.014G066200
[exp]
17.14 0.7298
AT5G13480 FY Transducin/WD40 repeat-like su... Potri.003G197900
[exp]
21.09 0.6302
AT3G47890 Ubiquitin carboxyl-terminal hy... Potri.012G071900
[exp]
22.22 0.6843
AT3G08670 unknown protein Potri.016G139500
[exp]
22.31 0.7197
AT5G64070 PI-4KBETA1, PI4... phosphatidylinositol 4-OH kina... Potri.005G059000
[exp]
22.75 0.6890
AT4G14720 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergen... Potri.002G048500
[exp]
28.93 0.6646
AT3G23900 RNA recognition motif (RRM)-co... Potri.017G058300
[exp]
30.19 0.6913

Potri.015G063100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.