Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74510 530 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G02870 497 / 3e-174 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT1G14330 481 / 1e-168 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G26930 448 / 1e-155 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G60570 312 / 5e-103 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G27150 215 / 5e-65 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G40680 201 / 9e-60 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G16250 91 / 6e-20 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G67480 90 / 2e-19 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G55270 90 / 2e-19 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G077800 [exp] 372 / 1e-125 AT5G60570 402 / 2e-138 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.019G042100 [exp] 372 / 2e-125 AT5G60570 419 / 3e-145 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G331500 [exp] 223 / 5e-68 AT3G27150 370 / 2e-125 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G069500 [exp] 219 / 3e-66 AT3G27150 355 / 7e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G008000 [exp] 104 / 3e-24 AT1G55270 731 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G217700 [exp] 100 / 6e-23 AT1G55270 733 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G104300 [exp] 95 / 5e-21 AT1G67480 473 / 1e-167 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G091900 [exp] 91 / 1e-19 AT1G22040 595 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.005G170000 [exp] 89 / 6e-19 AT1G22040 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012841 [exp] 499 / 1e-175 AT2G02870 568 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10036735 [exp] 494 / 2e-173 AT2G02870 570 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10030489 [exp] 491 / 1e-172 AT2G02870 551 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10037196 [exp] 477 / 1e-167 AT2G02870 536 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10023608 [exp] 357 / 1e-120 AT1G26930 353 / 9e-120 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037413 [exp] 341 / 3e-114 AT5G60570 589 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10041299 [exp] 340 / 8e-114 AT5G60570 592 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10024239 [exp] 151 / 4e-42 AT1G26930 147 / 3e-41 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10019425 [exp] 100 / 1e-22 AT1G55270 652 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10001071 [exp] 96 / 4e-21 AT1G55270 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF01344 [poplar] [flax] Kelch_1 Kelch motif
Representative CDS sequence Show only first row Show all	>Potri.015G063200.3 pacid=42776387 polypeptide=Potri.015G063200.3.p locus=Potri.015G063200 ID=Potri.015G063200.3.v4.1 annot-version=v4.1 ATGTTGGAAGCTTCATCTTATCCTGTCCCAAGAGAATTACCAGCATCATGTGAGGAAGAGAACACGTGGATTTATAATGCTTGCTGCGCTGTTGAGCTCT CAAACAAGCGGCCATTAGAAGATGGGGAAGATGTTGCCTCAAGAAAGGCAGCAAAGGTGCTGGAGGGCCATGAGAGACAGGAAAAGATGGAGGCTCTGCA TGTTCATTCCATTGTGCATACTGATCAACCAGATAATCAGTATCAAGCTGATTGTCTGCATGCTCTTTCAATTGCACAAACTAATCAACTAGAAAACCAC CATCAAGTAGATAATCAATCAGATTCGAGTTCACTCATTAACCAACTTGGTCGAGACTTATCAATAAGCTGTCTCCTCCACTGCTCAAGGTCTGATTATG GTGCCATTGCTTTACTCAATAAAAGCTTCCATTCTCTAGTTCAGAGTGGTCAGCTGTATAAGCTGAGGCGGGAAGCAGGAATTGTCGAGCGATGGGTATA TTTCTCTTGCAATCTCCTTGAATGGGAGGCCTATGATCCTATTCGTCGTCGATGGTTGCATTTGCCAAGAATTAAATCAAATGAATGTTTCATGTGTTCG GACAAGGAATCGCTGGCTGTTGGTACAGATCTTCTAGTTTTTGGAAAGGGAATAGAGTCCCATGTTATTTATAGATATAGCATTTTAACAAACACATGGA CATCTGGCATGAAGATGAACACACCCAGGTGCTTGTTTGGATCTTCCAGTCTGGGGGAAATTGCGATACTTGCTGGTGGTTGTGATCCACGTGGCAATGT TTTGAACTCAGCGGAGCTATACAATTCAGAAACTGGCATGTGGGTTGCTATTCCAAACATGAATAAAGCTAGGAAAATGTGTTCTGGACTATTTATGGAT GGCAAGTTTTATGTTATTGGTGGAATTGGAGCTGGCAATTCAAAGATGCTGACATGTGGGGAGGCATATGATTTGAAAACAAGAACGTGGCATGAGATAC CTGATATGCTGCCTGCTCAAAATGGAGGGGCTGTGGTCACAGAAACACCTGCTGCAGCTGGGGCACCTCCTTTAGTTGCAGTTGTGAATAATGAGCTCTA TGCAGCTGATTATGCACAAAAGGAGGTGAGGAAATATGACAAAAAAAACAATGTGTGGATTACACTTGGGAGGTTACCTGAACAAGCAGTTTCGATGAAT GGTTGGGGCCTGGCATTTAGGGCATGTGGAGATCGACTTATTGTTATAGGTGGACCTAGGGCTCTAGGTGGAGGGATGATTGAGCTGCACTCATGGGCTC CAGGTGATGGTCCTCCAAAGTGGGACCTGCTTGCTAGCAAGCCTTCGGGCAGCTTTGTGTACAATTGTGCTGTGATGGGATGCTGA
AA sequence Show only first row Show all	>Potri.015G063200.3 pacid=42776387 polypeptide=Potri.015G063200.3.p locus=Potri.015G063200 ID=Potri.015G063200.3.v4.1 annot-version=v4.1 MLEASSYPVPRELPASCEEENTWIYNACCAVELSNKRPLEDGEDVASRKAAKVLEGHERQEKMEALHVHSIVHTDQPDNQYQADCLHALSIAQTNQLENH HQVDNQSDSSSLINQLGRDLSISCLLHCSRSDYGAIALLNKSFHSLVQSGQLYKLRREAGIVERWVYFSCNLLEWEAYDPIRRRWLHLPRIKSNECFMCS DKESLAVGTDLLVFGKGIESHVIYRYSILTNTWTSGMKMNTPRCLFGSSSLGEIAILAGGCDPRGNVLNSAELYNSETGMWVAIPNMNKARKMCSGLFMD GKFYVIGGIGAGNSKMLTCGEAYDLKTRTWHEIPDMLPAQNGGAVVTETPAAAGAPPLVAVVNNELYAADYAQKEVRKYDKKNNVWITLGRLPEQAVSMN GWGLAFRACGDRLIVIGGPRALGGGMIELHSWAPGDGPPKWDLLASKPSGSFVYNCAVMGC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74510			Galactose oxidase/kelch repeat...		Potri.015G063200 [exp]	0	1
AT5G44870		TTR1, LAZ5	tolerance to Tobacco ringspot ...		Potri.006G282700 [exp]	14.79	0.8298
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145566 [exp]	16.24	0.8279
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014374 [exp]	23.15	0.8131
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Potri.007G020100 [exp]	27.11	0.7243
					Potri.011G151550 [exp]	31.22	0.7887
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011826 [exp]	33.13	0.7987
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145572 [exp]	39.87	0.8087
AT3G07400			lipase class 3 family protein ...		Potri.002G249400 [exp]	42.14	0.7715
AT5G36930			Disease resistance protein (TI...		Potri.011G009400 [exp]	45.95	0.8077
AT5G41590			Protein of unknown function (D...		Potri.003G133200 [exp]	47.56	0.7494

Compare expression of checked genes

Potri.015G063200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.