Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATH2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47780 1145 / 0 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT3G47740 1108 / 0 ATATH2, ABCA3 A. THALIANA ABC2 HOMOLOG 2, ATP-binding cassette A3, ABC2 homolog 2 (.1) AT3G47790 1090 / 0 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT3G47750 1059 / 0 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1) AT5G61700 999 / 0 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1) AT3G47770 992 / 0 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT3G47760 979 / 0 ATATH4, ABCA5 A. THALIANA ABC2 HOMOLOG 4, ATP-binding cassette A5, ABC2 homolog 4 (.1) AT5G61740 954 / 0 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47730 288 / 9e-83 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 263 / 2e-74 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069700 [exp] 1620 / 0 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.006G049300 [exp] 263 / 8e-73 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.012G069800 [exp] 257 / 5e-72 AT3G47730 1245 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.015G063500 [exp] 254 / 3e-71 AT3G47730 1288 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.013G123401 [exp] 160 / 3e-44 AT3G47790 135 / 3e-36 ATP-binding cassette A8, ABC2 homolog 7 (.1) Potri.014G137000 [exp] 91 / 2e-19 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.015G027600 [exp] 91 / 1e-18 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.002G212701 [exp] 89 / 2e-18 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.018G132000 [exp] 87 / 2e-18 AT1G67940 390 / 3e-138 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023612 [exp] 1329 / 0 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10024243 [exp] 604 / 0 AT3G47780 530 / 1e-178 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10023613 [exp] 272 / 3e-77 AT3G47730 1360 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10024244 [exp] 267 / 3e-75 AT3G47730 1349 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10012755 [exp] 233 / 9e-63 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023157 [exp] 227 / 7e-61 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10004262 [exp] 165 / 6e-42 AT3G47730 840 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10035453 [exp] 94 / 1e-20 AT1G67940 371 / 1e-130 ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 3, ATP-binding cassette I17, non-intrinsic ABC protein 3 (.1) Lus10020188 [exp] 94 / 3e-20 AT1G65410 500 / 2e-179 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Lus10026992 [exp] 93 / 9e-20 AT1G65410 476 / 2e-169 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF12698 [poplar] [flax] ABC2_membrane_3 ABC-2 family transporter protein
Representative CDS sequence Show only first row Show all	>Potri.015G063400.3 pacid=42776447 polypeptide=Potri.015G063400.3.p locus=Potri.015G063400 ID=Potri.015G063400.3.v4.1 annot-version=v4.1 ATGGCGGATTTGGATTCATCACCTCACACAGCAGCATTCTGGACTCAAGCTGATGCTCTGCTTAGAAAGAACTTAACTTATCAGAAACGAAACATTAGTG CGAATTGCAGGCTAATTTCCTTTCCATTTGTGCTGTGTATACTCCTTGTTATCACTCAAACACTGGTTGACAATCAACTAAACAAAAAAAGTAGCAAGTG TGGTTGTCAGTGTATTGATACTAATGGAGATGGGACATGCGAGACAGTCTGTGGTTTACAATTCTCAGATTTGGATCAATCGCCTAACTGTCCTGTTCCT AGTCCACTCAAGTGGCCTCCCTTGTTACAGGTTCCAGCTCCTCAATATCGTGCCGTCAGAAGTGCTTCTGATCCTTTTACAGATTTGCCTGACGAGTCTT GCAGACAAACTGGGAACTGCCCTGTTACTGTTTTTATCACTGGAACTAATCAGACACTTGGACAAAGTCTGGCTGCGAGTATGTTCTCACCTCCTTCCCC TCTTAATTCCACTAACAGTGTGCTGGGTTCAGATTCGGAAACTAGACAGGATAGTTTTCTTGATCCTGCTTTCTTCGAGGATTCTCTCTATAACATTCAA AGCCAGTGCACATCGAATTCTACAGCCAATGTTTCTGTTTCTCAGTCGCCATCCTTCAACTTCGTAAAGGAGACAGTATGTGTTCCAAGTCTGAGCTTGT GGCGCAATAGTACTTCAGAGATAAACGACCAGATATTCAGGGGCTATAAAAAAGGAAATGCAGAGAGGCAGTACAACGAGATACTTGGAGCCTATGATTT CTTGAACTCCAACGCCAATACTTTTAATGTGAGCGTGTGGTACAATGCCACAAATAAGGATACTGTTGATGGACAATACTACTTGGTGCGGTTACCACGT GCAGTAAATCTGGTATCAAATGCCTACCTTCAGTTGTTTCAAGGAAGAATGGAATTAGAGTTTATCAAAGAAATGCCTAAACCTGCAACGAAGCAGAAGC TGGATATCGCATCTCTTCTTGGCACTCTCTTCTTTACATGGGTTGTCATACAGCTATTTCCTGTGGTGTTGACAGCGCTGGTTTACGAGAAACAAGAAAA ACTACGAATCATGATGAAAATGCATGGGCTTGGAGACGGGCCTTATTGGATGATTTCTTACATGTATTTTCTTGTTATATCTGCACTATACATGTTCGTT TTTGTGGCATTCGGCTCACTAGTAGGTTTGAAATTCTTCACACTGAACGACTACTCCATCCAATTTGTGTTCTATTTTCTCTATATAAACCTGCAAATTT CCTTGGCGTTTCTAGCCTCCGCATTCTTTTCGAACGTCAAGACTGCTACAGTTGTAGGCTATATATGTGTCTTTGGAACTGGGCTTTTAGGTGGCTTTCT TTTCCAGAACTTCGTTGAAGATACTTCATTCCCAAAGGGATGGGTCATTTTTATGGAGTTATATCCTGGTTTTGCTCTATATCGTGGTTTGTATGAGTTT GCGGAGTATTCTTCCAGTGGCACCTCTATGGGGACTGATGGCATGAAGTGGGGAAATTTGAGTGCAAGTGAAAATGGGATGAGAGATGTGATGATTATCA TGCTTCTTGAGTGGCTTGCGCTGCTTTTTGTAGCATACTATGTGGATCAAGTTTTTTCATCTGGAAGTGGAAAAAATCCCAAGTATTTATTGCAAAAGTT TCGGAAGAAGCGTCCATCATCTTTTCGGAAGCCTAGTATGGGCAGGCAGGGATCTAAAGTTTTTGTTGATATGGATAAACCTGATGTCATTCAGGAGAGG GAGAAGGTTGAGCAGTTACTGCTGGAACCAACCACCAGTCATTCCATCGTCTGTGACAACCTGAGAAAGGTGTATCCAGGAAGGGATGGAAATGCAGAAA AATTGGCAGTGAGAGGATTATCTCTAGCTGTACCTCGAGGGGAGTGCTTCGGCATGCTTGGTCCAAATGGTGCAGGGAAAACCTCTTTCATTAGCATGAT GATTGGGCTCACAACGCCAACCACGGGGACAGCATATGTTGAGGGCTTAGACATTCGGACTGAAATGGATTGGGTTTATACCAGCATGGGCGTGTGCCCG CAGCATGACCTCCTATGGGAAACTCTGACGGGAAGAGAGCACTTATTATTTTATGGAAGACTTAAGAATCTAAGAGGCGCTGCTTTGAAAAGAGCAGTGG AGGAATCTCTTAGGAGCGTCAACCTTTTTAACGGAGGGGTTGCTGACAAAAAAGCTGGTAAATACAGTGGAGGTATGAAGAGAAGGCTTAGTGTTGCCAT ATCATTGATTGGAGATCCCAAAGTTGTTTATATGGATGAACCCAGTACTGGACTAGATCCAGCTTCAAGAAGCAATTTATGGAATGTTGTGAAGCGTGCG AAGCAAGACCGAGCAATTATCCTGACCACTCATTCAATGGAAGAGGCAGAGTACCTGTGTGATAGATTAGGAATTTTTGTTGATGGAAGCTTGCAGTGCG TAGGAAACCCAAAAGAGCTGAGGGGAAGGTACGGGGGATCTTACGTGTTCACAATGACCACATCCGTAAACGATGAGCGTGAGGTGGAGCAAATGGTTCT GCGCCTCTCCCCCAGCGCTGAAAGAACGTACCAGATGGCCGGAACCCAGAAGTTTGAGATGCCAAAAGAGGAGATCAGCATTGCAGATGTGTTCCAAGCA GTCGAGGTCGCCAAAAGCAGGTTCCCGGTTTATGCCTGGGGTCTGTCGGACACCACCTTAGAAGATGTCTTCATCAAGGTCGCAAACTCAGCCCAGCATT TCCACACGCTTACATGA
AA sequence Show only first row Show all	>Potri.015G063400.3 pacid=42776447 polypeptide=Potri.015G063400.3.p locus=Potri.015G063400 ID=Potri.015G063400.3.v4.1 annot-version=v4.1 MADLDSSPHTAAFWTQADALLRKNLTYQKRNISANCRLISFPFVLCILLVITQTLVDNQLNKKSSKCGCQCIDTNGDGTCETVCGLQFSDLDQSPNCPVP SPLKWPPLLQVPAPQYRAVRSASDPFTDLPDESCRQTGNCPVTVFITGTNQTLGQSLAASMFSPPSPLNSTNSVLGSDSETRQDSFLDPAFFEDSLYNIQ SQCTSNSTANVSVSQSPSFNFVKETVCVPSLSLWRNSTSEINDQIFRGYKKGNAERQYNEILGAYDFLNSNANTFNVSVWYNATNKDTVDGQYYLVRLPR AVNLVSNAYLQLFQGRMELEFIKEMPKPATKQKLDIASLLGTLFFTWVVIQLFPVVLTALVYEKQEKLRIMMKMHGLGDGPYWMISYMYFLVISALYMFV FVAFGSLVGLKFFTLNDYSIQFVFYFLYINLQISLAFLASAFFSNVKTATVVGYICVFGTGLLGGFLFQNFVEDTSFPKGWVIFMELYPGFALYRGLYEF AEYSSSGTSMGTDGMKWGNLSASENGMRDVMIIMLLEWLALLFVAYYVDQVFSSGSGKNPKYLLQKFRKKRPSSFRKPSMGRQGSKVFVDMDKPDVIQER EKVEQLLLEPTTSHSIVCDNLRKVYPGRDGNAEKLAVRGLSLAVPRGECFGMLGPNGAGKTSFISMMIGLTTPTTGTAYVEGLDIRTEMDWVYTSMGVCP QHDLLWETLTGREHLLFYGRLKNLRGAALKRAVEESLRSVNLFNGGVADKKAGKYSGGMKRRLSVAISLIGDPKVVYMDEPSTGLDPASRSNLWNVVKRA KQDRAIILTTHSMEEAEYLCDRLGIFVDGSLQCVGNPKELRGRYGGSYVFTMTTSVNDEREVEQMVLRLSPSAERTYQMAGTQKFEMPKEEISIADVFQA VEVAKSRFPVYAWGLSDTTLEDVFIKVANSAQHFHTLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.015G063400 [exp]	0	1	Pt-ATH2.2
AT3G10300			Calcium-binding EF-hand family...		Potri.006G047300 [exp]	1.00	0.9778
AT5G62280			Protein of unknown function (D...		Potri.015G130500 [exp]	1.73	0.9665
AT2G48140		EDA4	embryo sac development arrest ...		Potri.005G212000 [exp]	3.16	0.9671
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Potri.015G063500 [exp]	3.46	0.9430	Pt-ATH1.1
					Potri.013G117300 [exp]	7.41	0.9599
AT5G52390			PAR1 protein (.1)		Potri.009G040000 [exp]	8.94	0.9439
					Potri.001G019890 [exp]	9.79	0.9596
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	10.90	0.9568
					Potri.004G179877 [exp]	10.95	0.9239
AT4G03965			RING/U-box superfamily protein...		Potri.004G003101 [exp]	11.18	0.9363

Compare expression of checked genes

Potri.015G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.