Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47730 1288 / 0 ABCA2, ATATH1 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) AT5G61730 1199 / 0 ABCA9, ATATH11 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) AT5G61690 1162 / 0 ABCA11, ATATH15 ARABIDOPSIS THALIANA ABC2 HOMOLOG 15, ATP-binding cassette A11, ABC2 homolog 15 (.1) AT2G41700 262 / 3e-72 AtABCA1, ABCA1 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) AT3G47790 254 / 5e-71 ABCA8, ATATH7 ATP-binding cassette A8, ABC2 homolog 7 (.1) AT3G47780 253 / 1e-70 ABCA7, ATATH6 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) AT5G61740 244 / 7e-68 ABCA10, ATATH14 ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATP-binding cassette A10, ABC2 homolog 14 (.1) AT3G47750 242 / 1e-66 ATATH3, ABCA4 ATP-binding cassette A4, ATP binding cassette subfamily A4 (.1) AT3G47770 240 / 3e-66 ATATH5, ABCA6 A. THALIANA ABC2 HOMOLOG 5, ATP-binding cassette A6, ABC2 homolog 5 (.1) AT5G61700 236 / 5e-65 ABCA12, ATATH16 ARABIDOPSIS THALIANA ABC2 HOMOLOG 16, ATP-binding cassette A12, ABC2 homolog 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G069800 [exp] 1635 / 0 AT3G47730 1245 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Potri.015G063400 [exp] 268 / 9e-76 AT3G47780 1145 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.006G049300 [exp] 267 / 6e-74 AT2G41700 2741 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Potri.012G069700 [exp] 258 / 4e-72 AT3G47780 1139 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Potri.015G027600 [exp] 100 / 2e-21 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.005G064300 [exp] 92 / 6e-19 AT2G13610 900 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.007G104801 [exp] 89 / 7e-18 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 87 / 3e-17 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.015G036100 [exp] 84 / 4e-16 AT2G37360 276 / 2e-81 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023613 [exp] 1315 / 0 AT3G47730 1360 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10024244 [exp] 1305 / 0 AT3G47730 1349 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10004262 [exp] 803 / 0 AT3G47730 840 / 0.0 A. THALIANA ABC2 HOMOLOG 1, ATP-binding cassette A2 (.1) Lus10042172 [exp] 402 / 9e-129 AT5G61730 449 / 5e-147 ARABIDOPSIS THALIANA ABC2 HOMOLOG 11, ATP-binding cassette A9, ABC2 homolog 11 (.1) Lus10023612 [exp] 248 / 1e-68 AT3G47780 1202 / 0.0 A. THALIANA ABC2 HOMOLOG 6, ATP-binding cassette A7, ABC2 homolog 6 (.1) Lus10012755 [exp] 248 / 2e-67 AT2G41700 2655 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10023157 [exp] 199 / 7e-52 AT2G41700 1486 / 0.0 Arabidopsis thaliana ATP-binding cassette A1, ATP-binding cassette A1 (.1.2) Lus10029905 [exp] 99 / 7e-21 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 96 / 4e-20 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 85 / 1e-16 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF12698 [poplar] [flax] ABC2_membrane_3 ABC-2 family transporter protein
Representative CDS sequence Show only first row Show all	>Potri.015G063500.1 pacid=42775976 polypeptide=Potri.015G063500.1.p locus=Potri.015G063500 ID=Potri.015G063500.1.v4.1 annot-version=v4.1 ATGGAACTGATACACGGATTTCCATTACTGTACCAGCAATTTACGGCTTTGTTCAAGAAAAACCTGTTGCTTTCATGGAGAAACAAGAGTGCAACGTTCC TGCAGCTCTTCTCTTCTTTCTTCTTCATGTTCTTGTTGTTCGGTATCGAGAAGGCATCAGATTCTCGCTCAAAAGCAACGACAGGGTACAAAACCGTGAC GAATCCACAGCCTATGTGGGAATCTCCCATCCCTCCTTGTGAGGAAAAGTTCTACGTTAAAATGCCTTGTTTTGATTTCGTTTGGAGTGGAAATGATAGT TCTAGAATTGGCAATATCGTGACAGCCATCATGAATAATAATCCTAATAGGCAAATTCCCCCTGGAAAGGTTAAATCATTCAAGACACCAGAGGAAGTAG ATGATTGGCTTTTTAGAAATCCTATGCAAGTCCCAGGAGCTTTGCATTTTGTGGATGTAAGCCCCAGTTTAATCACCTATGGTCTACAGACTAACTCTAC TCCAATTGCTCGGCGAGGCCATTATGAAGATCCCACCTTCAAATTTCAAATTCCACTTCAGATTGCTGCAGAGCGTGAGATTGCTCGGTCTATTATTAAA GTTCCAACCTTTACATGGAGTGTCGGACTTACGGAATTTGCACACCCTGCAAAAGCTACCTTTTCTGCGGTGGCTACAGTAGGACCTGCCTTTTTCCTGG CATTCACCATGTTCGGATTTGTGTTGCAAATCAGTAATTTGGTGGCCGAGAAAGAGCTCAAACTTCGCCAGGCAATGAATATGACTGGTCTCTATGAATC TGCATATTGGACCTCATGGATCATATGGGAGGGGATTATCACGTTTATTTCATCACTCTTACTGGTTCTTTTTGGAATGATGTTTCAGTTCGATTTTTTC AAGAAAAACAGTTTCGGAGTTCTGTTCTTTGTGTTCTTCCTTTTCCAGGTCAACATGATTGGTTTTGCCTTCATGCTGTCGACCTTCATCAGCAAGGCCT CTTCAGGCACAACAATGGGTTTCTCCATATTTATAGTTGGTTTTATGACGCAGATTATTACAATAGCTGGATTTCCATACAAAAAAAGCATTAGTGCTTT CTTGCGCCTCATCTGGTCATTCTTCCCACCAAATCTTCTTGCGAAAGCAGTAAATGTGCTATCTGATGCAAGTAGCACTCCTGAAGCTCTCGGAATTAGC TGGAAAGGACGATCAAAGTGTCCACCTGACGTTGATGATTGTGTGATGACAATTAATGATGTTTACACATGGCTCATATGTCTGTTCATTCTCTGGTTTG CTTTGGCAATCTACTTCGATAATATATTCCCAAATGTATCTGGTGTGAGAAAATCTGTATTTTACTTCTTCAAGCCCGGGTATTGGACAGGGAAAGGTGG AGACAAAGTCGAAGAGGGTGGCATGTGTAGTTGCATAACTGATATCCCGCAGCAAGAGCATATTGTTCCAGATGATGAAGATGTGCTTGAAGAGGAGAAC ATCGTCAAAAATGATGCAAAAGACGGCACAGTAAACCCAGATATTGCAGTTCAGATACGTGGACTTGGAAAGACGTATCCTGGGGCTACACATATTGGTT GTTTCAAATGCAAGAAGACTTCACCTTACCATGCTGTTAGGGACTTGTGGGTCAACTTCACAAAGGATCAGTTGTTTTGTCTTCTTGGACCCAATGGTGC TGGAAAAACTACAACAATCAATTGCCTGACCGGCATAACACCTGTGACCGGCGGAGATGCCTTGGTTTATGGACATTCCGTTCGAAGCACGGTTGGCATG TCAGGCATTCGGAAAATTATAGGAGTTTGTCCACAGTTCGACATCCTCTGGGATGCATTGTCTGGTGAAGAACACCTCGAACTCTTTGCGAGCATTAAAG GTCTCCCCCCGGCTTCAATCAAATCGGTTGCTCGAGAATCGTTGGCGCAGGTGAAACTAACCGAATCAGCCAAAGTAAGAGCCAGGAGTTACAGTGGAGG AATGAGGCGCCGTCTGAGTGTTGCAATATCCCTTCTTGGTGACCCGAAGTTAATCATTTTGGATGAACCGACTACTGGTATGGACCCAATATCAAGAAGG CATGTCTGGGATATCATACAGAACACAAAGAAAGGTCGCGCCATTGTTCTAACAACTCATTCGATGGAAGAGGCTGACATTCTAAGTGACCGTATAGGAA TTATGGCCAAGGGTAGGCTCCGATGCATTGGAAACTCGATCAGGTTGAAGTCAAAGTTCGGCACTGGTTTTATTGCTAATGTGAGATTTGGCGATACCAA TGGTGGACATACTCCTGCCCGCACGCCAGTAGATACTTCGTCAGTTCATCACGAGGCTGTGAAGAAGTTCTTTAAATCTCATTTGGATGTAACACCAACA GATGAGACCAGATCCTTCTTGACTTTTGTCATTCCTCATGATAAAGAGAGCGTTTTAAAGAATTTCTTCGCGGAGCTTCAAGCTAGACAGAGAGAATTCA ACGTATCAGACATCCAGCTTGGCCTTGCAACTCTTGAAGAGGTCTTCTTGAACATTGCCAAGCAAGCAGAATTAGAAAGTGCTGCAGCTGAGGGGAAGAT GGTTACTCTGGACTTAACTTCTGGAAAGTCTGTTCAGATTCCCGTGGGAGCTAGATTTGTAGGGGTCCCAGAAACAAACTCGGAGGAGAATCCAAGTGGC ACTATGGTTGAAGTATACTGGGAGCAGGATGATTCAGGGTCACTCTGCATCTCTCGCCACTCAGCTGAAATGCCTGTGCCTTATAATGTTCAGCCATTGC GTTCAGAACCGCAACTGTTGGCCAGAACAAACATACTAGGAGGCCAGAGGAGAGGGCCAGTTTATGGATTGGTCTATGATTCCGATCAGATTATCACTGC TCAATCTTGTTAA
AA sequence Show only first row Show all	>Potri.015G063500.1 pacid=42775976 polypeptide=Potri.015G063500.1.p locus=Potri.015G063500 ID=Potri.015G063500.1.v4.1 annot-version=v4.1 MELIHGFPLLYQQFTALFKKNLLLSWRNKSATFLQLFSSFFFMFLLFGIEKASDSRSKATTGYKTVTNPQPMWESPIPPCEEKFYVKMPCFDFVWSGNDS SRIGNIVTAIMNNNPNRQIPPGKVKSFKTPEEVDDWLFRNPMQVPGALHFVDVSPSLITYGLQTNSTPIARRGHYEDPTFKFQIPLQIAAEREIARSIIK VPTFTWSVGLTEFAHPAKATFSAVATVGPAFFLAFTMFGFVLQISNLVAEKELKLRQAMNMTGLYESAYWTSWIIWEGIITFISSLLLVLFGMMFQFDFF KKNSFGVLFFVFFLFQVNMIGFAFMLSTFISKASSGTTMGFSIFIVGFMTQIITIAGFPYKKSISAFLRLIWSFFPPNLLAKAVNVLSDASSTPEALGIS WKGRSKCPPDVDDCVMTINDVYTWLICLFILWFALAIYFDNIFPNVSGVRKSVFYFFKPGYWTGKGGDKVEEGGMCSCITDIPQQEHIVPDDEDVLEEEN IVKNDAKDGTVNPDIAVQIRGLGKTYPGATHIGCFKCKKTSPYHAVRDLWVNFTKDQLFCLLGPNGAGKTTTINCLTGITPVTGGDALVYGHSVRSTVGM SGIRKIIGVCPQFDILWDALSGEEHLELFASIKGLPPASIKSVARESLAQVKLTESAKVRARSYSGGMRRRLSVAISLLGDPKLIILDEPTTGMDPISRR HVWDIIQNTKKGRAIVLTTHSMEEADILSDRIGIMAKGRLRCIGNSIRLKSKFGTGFIANVRFGDTNGGHTPARTPVDTSSVHHEAVKKFFKSHLDVTPT DETRSFLTFVIPHDKESVLKNFFAELQARQREFNVSDIQLGLATLEEVFLNIAKQAELESAAAEGKMVTLDLTSGKSVQIPVGARFVGVPETNSEENPSG TMVEVYWEQDDSGSLCISRHSAEMPVPYNVQPLRSEPQLLARTNILGGQRRGPVYGLVYDSDQIITAQSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47730		ABCA2, ATATH1	A. THALIANA ABC2 HOMOLOG 1, AT...		Potri.015G063500 [exp]	0	1	Pt-ATH1.1
AT3G47780		ABCA7, ATATH6	A. THALIANA ABC2 HOMOLOG 6, AT...		Potri.015G063400 [exp]	3.46	0.9430	Pt-ATH2.2
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.006G272600 [exp]	10.95	0.9272
AT3G13840	GRAS		GRAS family transcription fact...		Potri.001G168800 [exp]	14.24	0.9211
					Potri.013G117300 [exp]	16.97	0.9253
					Potri.001G019890 [exp]	18.81	0.9221
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	19.23	0.9244
AT2G46495			RING/U-box superfamily protein...		Potri.002G170300 [exp]	23.02	0.9146
AT1G13340			Regulator of Vps4 activity in ...		Potri.017G113900 [exp]	26.53	0.9072
AT3G10300			Calcium-binding EF-hand family...		Potri.006G047300 [exp]	27.14	0.9130
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G079500 [exp]	27.42	0.9155	Pt-WRKY72.1

Compare expression of checked genes

Potri.015G063500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.