Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15130 244 / 1e-72 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT1G18860 217 / 2e-63 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT1G68150 173 / 3e-48 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT4G04450 164 / 1e-43 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT1G69810 159 / 5e-43 WRKY ATWRKY36, WRKY36 WRKY DNA-binding protein 36 (.1) AT4G01720 156 / 5e-41 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G62300 152 / 2e-39 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G22070 149 / 4e-38 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT4G31800 106 / 5e-25 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT1G80840 102 / 7e-24 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G079500 [exp] 343 / 1e-110 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.004G007500 [exp] 186 / 6e-51 AT4G04450 419 / 8e-141 WRKY family transcription factor (.1) Potri.014G111900 [exp] 172 / 9e-47 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 169 / 1e-45 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.014G155100 [exp] 168 / 1e-44 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.001G208600 [exp] 167 / 1e-44 AT1G68150 210 / 5e-63 WRKY DNA-binding protein 9 (.1) Potri.002G228400 [exp] 166 / 5e-44 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.011G007800 [exp] 166 / 8e-44 AT1G62300 391 / 1e-129 WRKY family transcription factor (.1) Potri.002G221600 [exp] 104 / 5e-24 AT2G04880 255 / 3e-81 zinc-dependent activator protein-1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024246 [exp] 247 / 7e-72 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10023615 [exp] 213 / 4e-61 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10037205 [exp] 210 / 1e-60 AT5G15130 225 / 2e-67 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 203 / 4e-58 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10038028 [exp] 159 / 2e-42 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10035971 [exp] 157 / 1e-41 AT1G68150 206 / 3e-62 WRKY DNA-binding protein 9 (.1) Lus10035286 [exp] 157 / 7e-41 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10016682 [exp] 154 / 2e-40 AT1G68150 194 / 2e-57 WRKY DNA-binding protein 9 (.1) Lus10022959 [exp] 154 / 5e-40 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10015546 [exp] 150 / 5e-40 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G064100.1 pacid=42775200 polypeptide=Potri.015G064100.1.p locus=Potri.015G064100 ID=Potri.015G064100.1.v4.1 annot-version=v4.1 ATGATAAAAATGGATGCGGAGGATGCCATGAGAAGACCTCGTCATGAAGTTGTGCTGAAGGAGGATGATAGAGTTGATTCTAGTGGTGATGAAGGTAGTT GCAGAGAAGAGGCTGCTGCTGCTGCTGCTGCTGTCGGAAGTCAAAGAGGATGCCAGGAAAATGATGACCGGAGATCATCTTCACCACAACACAGAGACTC AGGCAAGCAGGTGATTGTAGCGACTAAAAATGAAAGAATCACCACGGAAGCTGATGCAAAAGAATCTTCCTGCCAAAAGGAACAGGATGATCAGCTTGAA TCTGCAAGAGCTGAGATGGGTGAAGTAAGAAAAGAAAATCAAAGGCTAAAAATACATTTGGATCGTGTAGTGAAGGATTATCGGACCCTTCAAGTGCAAT TCTATGAGATTATTCAGCAAGAAGAAACTAAGAAATCTACAGATACTGTCGATGATCATCAAGGAACTGAAGAACACGAGCTCGTGTCGCTTACCCTTGG AAGAATTTCGAGTGAACCTAAACGGGATGGAAAGAACAATAAAACTTCTAGCCAGGGGAAAAATCACGATGAGCAAGTTAAAGAAAGCCTCTCTCTTGGA TCACTCTGCACATTTGAAGCGTCTAAATCTGCTACCAATGAGACTTTGCCGAATCCAAGCCCCGTGAACAGTTTTGGTGAGCCAAAGGAAGAAGCCGGGG AGACTTGGCCACCCAGTAAAGCTCTCAAGACAATGCGAGGAGGAGATGATGAAGTTCCCCAGCAAAACCCTGCAAAGAAAGCTAGGGTTTCTGTCAGAGC TAGATGCGATACCCCAACGATGAATGACGGGTGCCAATGGAGAAAATATGGGCAAAAAATTGCCAAAGGGAACCCATGTCCTCGAGCATACTATCGCTGC ACTGTTGCACCATCATGCCCAGTACGGAAACAGGTACAAAGATGTGCTGAAGATATGTCCATCTTAACCACCACCTATGAAGGAACGCACAACCACCCAC TTCCTATTTCTGCCACGGCTATGGCTTCTACAACTTCTGCAGCTGCTTCCATGTTACTGTCTGGCTCATCATCGAGCTCTGCAGGAACTGCAGGTTTCAA TAACTCCGGCACCATCGCCGTTGACCTCCATGGACTAAACTACTATCTATCCGATAACTCAAAATCAAAGCAATTCTACTTGCACAACTCTTCACTGTCA TCTTCATCTCCATACCCTACAATCACTCTTGACCTCACTTCAAACCCATCCAGTGCTTCATCTCATTTCAATAGATTTACTACTTCAAGCTACCGGCCTA CCATTCAAAAATTTGCTTCAACAAGCCTCAACTTTGGCTCCTCTGATTCGTCTAACGCAATGCCTTGGGGCAATGGTTTCCTCACTGCTTCCGGCCAGTC TCACAACAGGATTAACCAACTTGGAACTTTAAACATTGGAAGACCAGCTATGGATCAGAGTAACATTTATGATCAGTTCTACACGCAAAACATTAATGAC CTGGCAGCTGCTACTTCTCAGCAGTCCCTGTCAGCCGATACCATAGCTGCTGCAACCAAGGCAATTACAGCAGACCCAAGTTTCCAATCTGCTTTAGCAG CTGCCCTCACTTCTATCATTGGCACTGGAACTGGCAGTAGCGCTACTGGTGTTGCAAATCTAGGTGTTGTTAATAATTTATTTCCAAAGTCGGAACGGGG ACCGGTTATTAATAGCTTCTCATCATCACCTCCTAACGGCAATCCATGTGCAAGCTACTTCAACAAAACGACGTCTTCAATAAATTCTCAGCCAGCTCCA AGTTCGATGACAATGTTTGTGCCACCTTCATTGCCATTTTCTACTCCTACGAATGCATCCGCGTCTGCTGTTGACAAGAATGATCGTGCCAACTGA
AA sequence Show only first row Show all	>Potri.015G064100.1 pacid=42775200 polypeptide=Potri.015G064100.1.p locus=Potri.015G064100 ID=Potri.015G064100.1.v4.1 annot-version=v4.1 MIKMDAEDAMRRPRHEVVLKEDDRVDSSGDEGSCREEAAAAAAAVGSQRGCQENDDRRSSSPQHRDSGKQVIVATKNERITTEADAKESSCQKEQDDQLE SARAEMGEVRKENQRLKIHLDRVVKDYRTLQVQFYEIIQQEETKKSTDTVDDHQGTEEHELVSLTLGRISSEPKRDGKNNKTSSQGKNHDEQVKESLSLG SLCTFEASKSATNETLPNPSPVNSFGEPKEEAGETWPPSKALKTMRGGDDEVPQQNPAKKARVSVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRC TVAPSCPVRKQVQRCAEDMSILTTTYEGTHNHPLPISATAMASTTSAAASMLLSGSSSSSAGTAGFNNSGTIAVDLHGLNYYLSDNSKSKQFYLHNSSLS SSSPYPTITLDLTSNPSSASSHFNRFTTSSYRPTIQKFASTSLNFGSSDSSNAMPWGNGFLTASGQSHNRINQLGTLNIGRPAMDQSNIYDQFYTQNIND LAAATSQQSLSADTIAAATKAITADPSFQSALAAALTSIIGTGTGSSATGVANLGVVNNLFPKSERGPVINSFSSSPPNGNPCASYFNKTTSSINSQPAP SSMTMFVPPSLPFSTPTNASASAVDKNDRAN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G064100 [exp]	0	1
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.015G019800 [exp]	2.82	0.9453
AT1G66920			Protein kinase superfamily pro...		Potri.017G116955 [exp]	3.74	0.9343
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Potri.009G030700 [exp]	7.41	0.9295
AT5G61640		PMSR1, ATMSRA1	ARABIDOPSIS THALIANA METHIONIN...		Potri.012G091100 [exp]	8.48	0.9171	Pt-PMSR1.2
AT3G21790			UDP-Glycosyltransferase superf...		Potri.016G016500 [exp]	8.48	0.9104
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.011G062600 [exp]	10.81	0.9325
AT5G61820			unknown protein		Potri.015G108500 [exp]	10.90	0.9270
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G180200 [exp]	10.95	0.9212	Pt-ATAF1.1
AT4G33920			Protein phosphatase 2C family ...		Potri.007G051900 [exp]	11.00	0.9212
AT4G15350		CYP705A2	"cytochrome P450, family 705, ...		Potri.009G066200 [exp]	11.31	0.9299

Compare expression of checked genes

Potri.015G064100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.