Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	FIS1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62530 963 / 0 ATP5CDH, ALDH12A1 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) AT1G54100 72 / 5e-13 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT1G23800 71 / 1e-12 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT2G24270 64 / 9e-11 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT3G48000 64 / 1e-10 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G74920 63 / 2e-10 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT2G14170 59 / 5e-09 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G79440 57 / 2e-08 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 55 / 9e-08 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G24503 48 / 1e-05 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G242333 [exp] 70 / 2e-12 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 69 / 5e-12 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.018G020600 [exp] 67 / 1e-11 AT2G24270 889 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.006G186800 [exp] 67 / 2e-11 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.015G070600 [exp] 67 / 2e-11 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.009G078600 [exp] 66 / 4e-11 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.002G189900 [exp] 65 / 6e-11 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.010G174000 [exp] 65 / 6e-11 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.018G109700 [exp] 65 / 6e-11 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004264 [exp] 954 / 0 AT5G62530 928 / 0.0 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) Lus10042174 [exp] 873 / 0 AT5G62530 856 / 0.0 ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, aldehyde dehydrogenase 12A1 (.1) Lus10007084 [exp] 75 / 6e-14 AT2G14170 850 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10042149 [exp] 73 / 2e-13 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10020459 [exp] 72 / 5e-13 AT2G14170 861 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Lus10036288 [exp] 69 / 5e-12 AT2G24270 929 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10003640 [exp] 66 / 3e-11 AT2G24270 931 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10029166 [exp] 66 / 4e-11 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 66 / 4e-11 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10034115 [exp] 64 / 2e-10 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.015G064200.2 pacid=42776376 polypeptide=Potri.015G064200.2.p locus=Potri.015G064200 ID=Potri.015G064200.2.v4.1 annot-version=v4.1 ATGATGTATGGATTCCTAGTATGCAGAGCATCCCAAAAGGCTACAAGAAATTGGCTTAGCTCATTCAATCTCTCAAGATCTGTTCATTCCTTACCTTTTG CAACAGTAGATGCTGAAGGTATTTCTGGCTCTCAACCTGCTAAAGTACACAACTTGGTGCAGGGTAAATGGATAGGATCTTCAACCTGGAATACAATTGT GGATCCTTTAAATGGAGAACCATTCATTAAAATTGCTGAGGTAGATGAAACTGGAACTCAGCCATTTGTAGAGAGTTTGTCGAAGTGTCCCAAGCATGGA CTGCACAATCCCTTTAAATCACCAGAGAGGTATCTTTTATATGGAGACATAACTGCCAAGGCAGCCCACATGCTTGCGGTTCCAAAGGTTTCTGATTTCT TCACCAGGTTAATTCAAAGGGTTGCTCCTAAGAGTTACCAGCAAGCTCTTGGTGAAGTGCAAGTTACTCAAAAATTTCTGGAGAATTTCTCAGGTGATCA GGTTCGTTTCCTGGCAAGGTCTTTTGCAGTGCCAGGAAATCATCTTGGACAGCAAAGTCATGGTTTCCGGTGGCCTTACGGTCCTGTTGCAATTATTACT CCGTTCAATTTCCCACTAGAGATTCCTTTACTTCAGTTGATGGGTGCGTTATATATGGGCAACAAACCCATTCTTAAAGTTGATAGCAAGGTGTGCATTG TTATGGAGCAAATGATACGCCTACTCCATCACTGTGGAATGCCTTTGAGTGATGTTGACTTCATAAATTCTGATGGGAAGACGATGAACAAGCTTTTGCA GGAGGCAAATCCACAAATGACCCTCTTCACCGGTAGCTCAAAAGTTGCAGAAAAGTTGGCTGTTGACTTGAAGGGTCGGATTAAATTGGAAGATGCTGGA TTTGACTGGAAAATTTTAGGACCAGATGTTAATGAGGTAGATTACATTGCTTGGGTTTGTGACCAGGATGCATATGCATGCAGCGGTCAGAAGTGCTCTG CACAGTCAATTCTATTCATGCATGAGAACTGGTCTGCTACTTCACTCATATCCAAAATGAAGGATCTCGCAGAGAGAAGGAAATTAGAGGATCTAACTAT TGGCCCTGTTCTCACTTTAACAACTGAAGCAATGCTAGACCATATGAATAAATTACTTCAGATTCCAGGTTCGAAGCTGCTTTTTGGTGGAAAACCTCTG GAGAATCATTCCATTCCTTCCATATATGGCGCTCTCAAACCAACAGCCATTTATGTTCCTCTTGAAGAAATTTTAAGGGCCAAAAATTATGAGCTTGTAA CAAGAGAAATTTTTGGACCATTCCAGGTTATTACTGAATACAAGAAAGATCAACTCCCAATGGTTTTGGATGCTTTGGAGAGAATGCATGCTCATTTAAC GGCCGCTGTAGTTTCAAATGATGTTCTGTTTCTTCAGGAAGTTATTGGCAAAACGGTGAATGGGACTACTTATGCTGGATTAAGAGCAAGAACAACTGGG GCTCCACAGAATCATTGGTTTGGACCGGCTGGAGACCCGAGAGGTGCCGGGATTGGCACCCCAGAAGCAATAAAACTTGTTTGGTCTTGCCATAGAGAAG TGATATATGATTTCGGTCCCCTTCCAAAGCTTTGGGAAATTCCACCGAGTACTTAA
AA sequence Show only first row Show all	>Potri.015G064200.2 pacid=42776376 polypeptide=Potri.015G064200.2.p locus=Potri.015G064200 ID=Potri.015G064200.2.v4.1 annot-version=v4.1 MMYGFLVCRASQKATRNWLSSFNLSRSVHSLPFATVDAEGISGSQPAKVHNLVQGKWIGSSTWNTIVDPLNGEPFIKIAEVDETGTQPFVESLSKCPKHG LHNPFKSPERYLLYGDITAKAAHMLAVPKVSDFFTRLIQRVAPKSYQQALGEVQVTQKFLENFSGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIIT PFNFPLEIPLLQLMGALYMGNKPILKVDSKVCIVMEQMIRLLHHCGMPLSDVDFINSDGKTMNKLLQEANPQMTLFTGSSKVAEKLAVDLKGRIKLEDAG FDWKILGPDVNEVDYIAWVCDQDAYACSGQKCSAQSILFMHENWSATSLISKMKDLAERRKLEDLTIGPVLTLTTEAMLDHMNKLLQIPGSKLLFGGKPL ENHSIPSIYGALKPTAIYVPLEEILRAKNYELVTREIFGPFQVITEYKKDQLPMVLDALERMHAHLTAAVVSNDVLFLQEVIGKTVNGTTYAGLRARTTG APQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDFGPLPKLWEIPPST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62530		ATP5CDH, ALDH12...	ARABIDOPSIS THALIANA DELTA1-PY...		Potri.015G064200 [exp]	0	1	FIS1.3
AT4G31980			unknown protein		Potri.017G145100 [exp]	1.00	0.8220
AT2G31200		ADF6, ATADF6	actin depolymerizing factor 6 ...		Potri.005G223800 [exp]	2.00	0.7546
AT1G05940		CAT9	cationic amino acid transporte...		Potri.002G137000 [exp]	3.46	0.7349	PtrCAT9
AT3G52390			TatD related DNase (.1.2)		Potri.016G068400 [exp]	6.70	0.7477
AT2G05710		ACO3	aconitase 3 (.1)		Potri.014G153400 [exp]	22.04	0.6561
AT1G16916			unknown protein		Potri.011G109100 [exp]	22.13	0.6156
AT5G63890		HISN8, ATHDH	HISTIDINE BIOSYNTHESIS 8, hist...		Potri.001G465300 [exp]	25.76	0.6850
AT2G03270			DNA-binding protein, putative ...		Potri.006G054600 [exp]	28.16	0.6180
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.013G000400 [exp]	33.04	0.6517
AT3G04680		CLPS3	CLP-similar protein 3 (.1.2)		Potri.017G077200 [exp]	33.40	0.6367

Compare expression of checked genes

Potri.015G064200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.