Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74700 462 / 3e-166 NUZ, TRZ1 tRNAse Z1 (.1) AT2G04530 328 / 5e-112 CPZ, TRZ2 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G160600 [exp] 348 / 1e-119 AT2G04530 528 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.010G106200 [exp] 44 / 9e-05 AT2G01730 898 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023618 [exp] 460 / 1e-164 AT1G74700 437 / 3e-156 tRNAse Z1 (.1) Lus10024249 [exp] 451 / 5e-161 AT1G74700 433 / 1e-154 tRNAse Z1 (.1) Lus10014623 [exp] 343 / 8e-118 AT2G04530 543 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Lus10033809 [exp] 340 / 8e-117 AT2G04530 540 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0381 [poplar] [flax] Metallo-HOrase PF12706 [poplar] [flax] Lactamase_B_2 Beta-lactamase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.015G064400.1 pacid=42776413 polypeptide=Potri.015G064400.1.p locus=Potri.015G064400 ID=Potri.015G064400.1.v4.1 annot-version=v4.1 ATGGAAAGAAGAAAAGAAAGAGGAGAAGAGAACGAGAGTGATGATTCAGTTCGGGAAAAGAGAAAGGAAGAAGAGACGAAAAGAATAATTGAAGGGTACC CAGTGGAGGGATTGTCAATAGGAGGGCATGAAACTTGCATTATTTTCTCTTCTCTCAATATGGCTTTCGATATTGGTCGATGCCCACAACGCGCTATCTC ACAGGACTTCCTTTTCATCTCTCATGCTCACATGGATCATATTGGAGGACTGCCTATGTATGTTGCCACCCGTGGCTTATACCGAATGAAGCCTCCAACA GTTGTTGTGCCCACTTGCATCAAAGAAACTGTCGAACAACTCTTTGAGGTGCATAGGAGACTTGATGGATCAGAGCTCAAGCATCACCTTATCGCTCTCG ATGTCGGACAAGAGTTTTATGTGAGAAAGGACCTTAAAGTAAGAGCATTCAAGACGTACCACGCAATTCAAAGTCAGGGTTATGTGGTTTACTCTGTGAA ACAGAAACTTAAGCAGGAGTACCTTGGCCTTTCTGGGAATGAGATTAAAAGCTTGAAGTCATCAGGTGTTGAGATTACAAACACTGTAACTTCTCCTGAG ATCGCTTTTACTGGTGACACCATGTCAGACTTTATTATCGATGAAACCAATATTGATGTTTTGAGGGCCAAGGTTCTTGTTATGGAGAGCACCTTTGTTG ATGGCACAGTAACAGTTGAGCATGCAAGAGATTATGGGCACACTCATCTATTTGAGATAGTTAACTATGCAGACAAATTTCAGAACAAAGCAATCCTTCT AATTCATTTTTCAGCTCGTTACACAGTGAAGGAAATCCAAGAAGCTGTACAAAGACTACCACAGCCTTTAGCTGGCCGAGTTTTTGCACTTACAGAAGGT TTTTGA
AA sequence Show only first row Show all	>Potri.015G064400.1 pacid=42776413 polypeptide=Potri.015G064400.1.p locus=Potri.015G064400 ID=Potri.015G064400.1.v4.1 annot-version=v4.1 MERRKERGEENESDDSVREKRKEEETKRIIEGYPVEGLSIGGHETCIIFSSLNMAFDIGRCPQRAISQDFLFISHAHMDHIGGLPMYVATRGLYRMKPPT VVVPTCIKETVEQLFEVHRRLDGSELKHHLIALDVGQEFYVRKDLKVRAFKTYHAIQSQGYVVYSVKQKLKQEYLGLSGNEIKSLKSSGVEITNTVTSPE IAFTGDTMSDFIIDETNIDVLRAKVLVMESTFVDGTVTVEHARDYGHTHLFEIVNYADKFQNKAILLIHFSARYTVKEIQEAVQRLPQPLAGRVFALTEG F

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Potri.015G064400 [exp]	0	1
AT1G75340	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.006G081100 [exp]	8.24	0.8043
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.016G045800 [exp]	8.66	0.8051
AT4G37020			unknown protein		Potri.007G043200 [exp]	11.31	0.8069
AT4G27510			unknown protein		Potri.004G133900 [exp]	15.55	0.7878
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	22.97	0.7725	ATRH1.1
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Potri.001G351532 [exp]	25.45	0.7848
AT3G26922			F-box/RNI-like superfamily pro...		Potri.011G104300 [exp]	28.98	0.7881
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Potri.014G166300 [exp]	34.05	0.7933
AT2G20930			SNARE-like superfamily protein...		Potri.004G176500 [exp]	36.37	0.7561
AT1G08450		AtCRT3, PSL1, E...	PRIORITY IN SWEET LIFE 1, EMS-...		Potri.017G026300 [exp]	37.41	0.6902

Compare expression of checked genes

Potri.015G064400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.