Plant FIBer expression Database

Potri.015G064600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62760 474 / 2e-159 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004265
[exp]
500 / 2e-168 AT5G62760 427 / 1e-140 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Lus10042176
[exp]
470 / 2e-158 AT5G62760 391 / 2e-128 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.015G064600.4 pacid=42776372 polypeptide=Potri.015G064600.4.p locus=Potri.015G064600 ID=Potri.015G064600.4.v4.1 annot-version=v4.1
ATGGATCATCAATGGCGACCAATACCACCTCCTCACCCTACCAGTATCTGCCCTATCTGCTCCTTTTCTCACTTCCCATTCTGTCCCCCTCCCCCCCCCC
CCCCCCCTCCTCCTCCTCAATACAATCAAAGCCCTAGATTCCCACCTCCACCTCCACCACCGCAGCCCGAACACCCGTATCATTCTGGCCCACCCAACCC
ATACATGGTCGTCAACCCTAACCAGGGGTGGCAGTGGCACAGAGAAGACGGATATGGACATCCCAATCCCATGTATGATTATTATAGGAATAGCGCTGCG
AGTTGTATTAATGGTGAAGCTGATCGGAGCTATAAGAGGCCAAGGGTTGATGGTAGCATTGGATCTGGTATGTTTGGATACGAGAATAATCAAAGTCCAG
CTAATTTTTTTTCGGATGACGAGCGTAGATTGAAGCTGATTCGCGAGCACGGCAACACAACTAGTCTGTATAGTCCTTTTCCGCCCACACATGATGATAT
GAATAATAATAACTGGAAAAATCAGCCAATGCCTAATTCCGCCGAAATGAGGCGGCAGCAGCTGCCAATTGAAAGTGTTTACCATGAAAATAATAGGGCG
TTTGGCGGACATCCGCCGCCGCCTCCGCCTCCGCCTCCGCCAACTTCACCGCCACCGCCTCTTCCTATGGAACCACCACTCCTCCCTTCACCCCCCAAGT
CATCATCTGCTTTGTTTCCTGTTCCTATTAATTCCGCAGCTACCAATCCTTATCTGCATAACAACTCATCTGGGTTTGTTTCTGAGGAATGGAAACAATC
CTCTGGAAAAACTTTTTTGCATAAGAAATTGTCTCCAGAGAGGCCAATAGTAGTTGATGCTTCTCACTTGTTTAAGATGCCTCATCGTGCAACTCGCCCC
AATCATATTGTGATAATTCTTAGAGGGCTTCCAGGCAGTGGTAAAAGTTACTTAGCAAAGACGATGCGTGACCTTGAGGTTGAAAATGGTGGTAATGTGC
CACGAATTCATTCCATGGATGACTATTTCATGACTGAAGTTGAAAAGGTTGAAGACGGTGATGCTTCAAAATCTTCAAGCTCTACAAGAGGCAAGAAACC
AATTGTAAAGAAGGTGGTCATGGAGTATTGTTATGAACCTGAAATGGAAGAGGCTTATCGAGAAAGCTTGTTGAAAGCATTCAAGAAGACCCTTGAGGAG
GGAACTTTCACCCTTGTCATTGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAATTTTGGGCAATTGCAAAGAGAACAGGCTACGAAGTTTACA
TATCAGAGGCTACATATAAAGACCCTGTAGGTTGTGCTGCTAGGAATGTACATGGTTTTACCATAGATGAAATACAAACAATGGCCCGGCGGTGGGAAGA
AGCTCCATTGATTTACACTCAATTGGACATCAAGTCATTATTCTGTGGAGATGACCTGAAGAAAAATGGAATTCAAGAGGTTGACATGGACACTGAAGAT
GGAGACTTTGGTAATCCATCAAACCTGCAGGAAGGAAAGCCTGAGAAGACAATAGTTCCTCCCATAGAAGATGCACCTCATGTTCCTGCAAAAGACAGTA
AGAGATGGGATGCTGAAGAGGACCATCCTTCAAGATTGAAAGAATTGGGTAAAAGTAAATGGTCAGATGATTTAGATGAAGCTGACACACAAGGATCTGA
AAGCATGAGGACTAATAATGCTCTTTCTGGATTGGTTCAAGCTTATCAAAAGCAACGAAAATCAGTGCATTGGAGTGACCAGGTTGGGGATACTGGGTTT
TCTATAGTTGCAGCAAAGAAAGCAAATATGTTGTCTCTAGTTATTGGACCGGGTGCTGGATACAACTTGAAGTCCAACCCATTATCTGAAGAGGAGCGAC
CAACTTCAACCGCAGGCGTTGGCAAGTCAAAGCAGAGCATATTCCAAGAGCGACTTCGCGTGGAGCACGAGTCCTTTAAAGCTGTTTTTGATCGGAGGAA
ACAGCGCATTGGTGGATTGGATTCCGAGGAATAA
AA sequence
>Potri.015G064600.4 pacid=42776372 polypeptide=Potri.015G064600.4.p locus=Potri.015G064600 ID=Potri.015G064600.4.v4.1 annot-version=v4.1
MDHQWRPIPPPHPTSICPICSFSHFPFCPPPPPPPPPPPQYNQSPRFPPPPPPPQPEHPYHSGPPNPYMVVNPNQGWQWHREDGYGHPNPMYDYYRNSAA
SCINGEADRSYKRPRVDGSIGSGMFGYENNQSPANFFSDDERRLKLIREHGNTTSLYSPFPPTHDDMNNNNWKNQPMPNSAEMRRQQLPIESVYHENNRA
FGGHPPPPPPPPPPTSPPPPLPMEPPLLPSPPKSSSALFPVPINSAATNPYLHNNSSGFVSEEWKQSSGKTFLHKKLSPERPIVVDASHLFKMPHRATRP
NHIVIILRGLPGSGKSYLAKTMRDLEVENGGNVPRIHSMDDYFMTEVEKVEDGDASKSSSSTRGKKPIVKKVVMEYCYEPEMEEAYRESLLKAFKKTLEE
GTFTLVIVDDRNLRVADFAQFWAIAKRTGYEVYISEATYKDPVGCAARNVHGFTIDEIQTMARRWEEAPLIYTQLDIKSLFCGDDLKKNGIQEVDMDTED
GDFGNPSNLQEGKPEKTIVPPIEDAPHVPAKDSKRWDAEEDHPSRLKELGKSKWSDDLDEADTQGSESMRTNNALSGLVQAYQKQRKSVHWSDQVGDTGF
SIVAAKKANMLSLVIGPGAGYNLKSNPLSEEERPTSTAGVGKSKQSIFQERLRVEHESFKAVFDRRKQRIGGLDSEE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62760 P-loop containing nucleoside t... Potri.015G064600
[exp]
0 1
AT5G55100 SWAP (Suppressor-of-White-APri... Potri.001G356800
[exp]
1.00 0.9018
AT1G04080 PRP39 Tetratricopeptide repeat (TPR)... Potri.014G192800
[exp]
1.73 0.8593
AT4G36980 unknown protein Potri.005G138200
[exp]
4.00 0.8880
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.015G085700
[exp]
4.58 0.8029
AT1G51130 Nse4, component of Smc5/6 DNA ... Potri.016G046802
[exp]
7.93 0.8284
AT3G55020 Ypt/Rab-GAP domain of gyp1p su... Potri.010G215000
[exp]
8.71 0.8051
AT5G44800 PKR1, CHR4, MI-... PICKLE RELATED 1, chromatin re... Potri.010G172100
[exp]
8.94 0.8309
AT5G15640 Mitochondrial substrate carrie... Potri.008G100100
[exp]
9.00 0.7849
AT4G32440 Plant Tudor-like RNA-binding p... Potri.001G173900
[exp]
9.89 0.8097
AT4G36980 unknown protein Potri.007G044100
[exp]
10.00 0.8389

Potri.015G064600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.