Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15110 511 / 5e-180 Pectate lyase family protein (.1) AT3G01270 504 / 1e-177 Pectate lyase family protein (.1) AT1G14420 497 / 7e-175 AT59 Pectate lyase family protein (.1) AT2G02720 487 / 5e-171 Pectate lyase family protein (.1) AT4G13710 485 / 7e-170 Pectin lyase-like superfamily protein (.1.2) AT3G07010 475 / 7e-167 Pectin lyase-like superfamily protein (.1) AT3G24670 466 / 4e-163 Pectin lyase-like superfamily protein (.1) AT5G63180 464 / 2e-162 Pectin lyase-like superfamily protein (.1) AT1G04680 456 / 2e-159 Pectin lyase-like superfamily protein (.1) AT1G67750 455 / 5e-159 Pectate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G148800 [exp] 602 / 0 AT5G15110 523 / 0.0 Pectate lyase family protein (.1) Potri.004G124100 [exp] 536 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Potri.017G078400 [exp] 521 / 0 AT5G15110 481 / 7e-168 Pectate lyase family protein (.1) Potri.001G052300 [exp] 475 / 2e-166 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.003G175900 [exp] 466 / 1e-162 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.012G091500 [exp] 460 / 3e-161 AT4G24780 645 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.015G087800 [exp] 460 / 9e-161 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G238800 [exp] 457 / 2e-159 AT3G07010 655 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G178100 [exp] 457 / 3e-159 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036721 [exp] 558 / 0 AT3G01270 565 / 0.0 Pectate lyase family protein (.1) Lus10037207 [exp] 554 / 0 AT3G01270 561 / 0.0 Pectate lyase family protein (.1) Lus10023623 [exp] 554 / 0 AT3G01270 517 / 0.0 Pectate lyase family protein (.1) Lus10030791 [exp] 541 / 0 AT5G15110 533 / 0.0 Pectate lyase family protein (.1) Lus10005254 [exp] 525 / 0 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10030670 [exp] 499 / 9e-176 AT3G01270 558 / 0.0 Pectate lyase family protein (.1) Lus10033018 [exp] 498 / 2e-174 AT5G15110 561 / 0.0 Pectate lyase family protein (.1) Lus10022817 [exp] 473 / 8e-166 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 473 / 8e-166 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 473 / 1e-165 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00544 [poplar] [flax] Pectate_lyase_4 Pectate lyase CL0268 [poplar] [flax] PF04431 [poplar] [flax] Pec_lyase_N Pectate lyase, N terminus
Representative CDS sequence Show only first row Show all	>Potri.015G064700.1 pacid=42776669 polypeptide=Potri.015G064700.1.p locus=Potri.015G064700 ID=Potri.015G064700.1.v4.1 annot-version=v4.1 ATGGGAGCTGTTAAAAATTACATGTTGTTAGTTTTCTTTGCATTAGCCATGCAAACTTCAACTCTAAAGGCCGGCATTGCCAATTTCGACGAGTACTGGA AAAAGCGAGCTGAAGAGGCCAAGGAGGCTTCCCGCGAGGCCTACGAACCAAATCCGGCGAAAGTCACTAAACATTTCAACGATGAAGTGCACAAGTCATT GGAAGGTGGCAATAGCACAAGAAGGAATCTAGGAAAAAACAAAGGGCCATGCCTAGCAACAAATCCTATCGACCGATGCTGGAGATGTGATAAAAACTGG GCCAAAAACCGCAAGAAGCTGGGAGGTTGTGCTCTAGGGTTTGGACGCAAAACCATAGGAGGCAAGCATGGAAAATACTACCGGGTAACAGACCCGTCAG ACAATGACATGGTGAATCCTAAGGCAGGAACATTGCGCTATGGAGTGATTCAGGACAAACCGCTTTGGATTATATTTGCTCATGATATGGTTATTAGGCT AAGTGAAGAGCTAATGGTGGCATCAAATAAGACTATTGATGGGCGCGGTGTTAATGTGCACATTTACAATGGTGCTCAAATTACTCTACAGTTTGTGAAA AATGTGATCATCCATGGGATCCACATCCATGATGCTAAAGCTGGAAATGGTGGGATGATTAGAGACTCGGTGGATCATTATGGCTTTCGTTCTCGGAGCG ATGGAGATGGGATTTCAATATTTGGGTCAACTGATATTTGGATTGATCATATCTCCTTGTCTAATTGCGAAGATGGCCTCATCGATGCCATCATGGGATC CAATGCCATCACCATATCTAATTGCCACTTCACCAAACATAATGATGTAATGTTGTTTGGTGCAAGCGATAGTTATTCTGGCGATTCAGTGATGCAAATA ACTGTTGCTTTCAACCACTTTGGTCGTGGATTAGTGCAAAGAATGCCGAGGGTCCGATGGGGGTTTGTGCATGTTGTAAACAATGACTATACTCACTGGG AAATGTATGCTATTGGTGGTAGCCAACATCCTACTATCATTAGCCAGGGTAACCGGTTTGTTGCTCCTCCTGATCCAGCATGCAAAGAGGTGACCAAGAG GGACTATGCAGTTGAAAGTGTGTGGAAGTCCTGGAATTGGAGATCAGAGGGGGATTTGATGCTCAACGGAGCCTTCTTTGTTCAATCTGGTAATGCAATC AAGACAATGAACAAACAGGCTGTGATCAGTGCAAAGCCTGGTAGATATGTGAGCAGGCTCACACGCTTCTCCGGTGCTCTCAATTGCGTTAGAGGTAGAC CTTGTTAA
AA sequence Show only first row Show all	>Potri.015G064700.1 pacid=42776669 polypeptide=Potri.015G064700.1.p locus=Potri.015G064700 ID=Potri.015G064700.1.v4.1 annot-version=v4.1 MGAVKNYMLLVFFALAMQTSTLKAGIANFDEYWKKRAEEAKEASREAYEPNPAKVTKHFNDEVHKSLEGGNSTRRNLGKNKGPCLATNPIDRCWRCDKNW AKNRKKLGGCALGFGRKTIGGKHGKYYRVTDPSDNDMVNPKAGTLRYGVIQDKPLWIIFAHDMVIRLSEELMVASNKTIDGRGVNVHIYNGAQITLQFVK NVIIHGIHIHDAKAGNGGMIRDSVDHYGFRSRSDGDGISIFGSTDIWIDHISLSNCEDGLIDAIMGSNAITISNCHFTKHNDVMLFGASDSYSGDSVMQI TVAFNHFGRGLVQRMPRVRWGFVHVVNNDYTHWEMYAIGGSQHPTIISQGNRFVAPPDPACKEVTKRDYAVESVWKSWNWRSEGDLMLNGAFFVQSGNAI KTMNKQAVISAKPGRYVSRLTRFSGALNCVRGRPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G15110			Pectate lyase family protein (...		Potri.015G064700 [exp]	0	1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.006G253300 [exp]	1.73	0.7720
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.009G088466 [exp]	2.00	0.7719
AT3G19620			Glycosyl hydrolase family prot...		Potri.007G114300 [exp]	3.46	0.8422
					Potri.014G003501 [exp]	3.74	0.7448
					Potri.005G071951 [exp]	8.00	0.7133
					Potri.010G221301 [exp]	9.21	0.7628
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.004G200001 [exp]	12.40	0.6935
AT5G09550			GDP dissociation inhibitor fam...		Potri.007G115300 [exp]	20.00	0.6981
AT3G22910			ATPase E1-E2 type family prote...		Potri.016G009101 [exp]	25.27	0.6992
AT5G44440			FAD-binding Berberine family p...		Potri.011G162856 [exp]	40.98	0.6887

Compare expression of checked genes

Potri.015G064700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.