Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07400 64 / 6e-13 HSP20-like chaperones superfamily protein (.1) AT2G27140 64 / 3e-12 HSP20-like chaperones superfamily protein (.1) AT5G20970 62 / 1e-11 HSP20-like chaperones superfamily protein (.1) AT1G59860 61 / 1e-11 HSP20-like chaperones superfamily protein (.1) AT5G12020 59 / 3e-11 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G04890 60 / 1e-10 RTM2 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) AT1G53540 57 / 2e-10 HSP20-like chaperones superfamily protein (.1) AT4G10250 55 / 2e-09 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT1G54400 55 / 2e-09 HSP20-like chaperones superfamily protein (.1) AT4G21870 53 / 4e-09 HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070100 [exp] 262 / 7e-90 AT2G27140 74 / 3e-16 HSP20-like chaperones superfamily protein (.1) Potri.008G013800 [exp] 71 / 2e-14 AT5G04890 135 / 3e-36 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 61 / 8e-12 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.010G245500 [exp] 63 / 1e-11 AT5G04890 113 / 2e-28 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 61 / 1e-11 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1) Potri.013G054700 [exp] 60 / 2e-11 AT1G54400 93 / 3e-24 HSP20-like chaperones superfamily protein (.1) Potri.004G191101 [exp] 61 / 4e-11 AT2G27140 109 / 2e-28 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 59 / 4e-11 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 59 / 5e-11 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024258 [exp] 128 / 9e-38 AT5G04890 61 / 2e-11 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10023624 [exp] 128 / 2e-36 AT5G04890 47 / 4e-06 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10008426 [exp] 69 / 1e-13 AT2G27140 111 / 7e-29 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 58 / 3e-10 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 56 / 2e-09 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10003356 [exp] 56 / 4e-09 AT2G27140 103 / 3e-26 HSP20-like chaperones superfamily protein (.1) Lus10007666 [exp] 50 / 7e-08 AT4G21870 122 / 2e-36 HSP20-like chaperones superfamily protein (.1) Lus10028874 [exp] 52 / 9e-08 AT5G04890 103 / 4e-24 RESTRICTED TEV MOVEMENT 2, HSP20-like chaperones superfamily protein (.1) Lus10000932 [exp] 51 / 9e-08 AT4G10250 200 / 2e-65 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 49 / 3e-07 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.015G064800.1 pacid=42776674 polypeptide=Potri.015G064800.1.p locus=Potri.015G064800 ID=Potri.015G064800.1.v4.1 annot-version=v4.1 ATGGCAAATAATGGAGGAATGAGATCAGGAGGGATTGCAGACCGGACACGGTCGCGTAGCCACGTTGTTGAAGAGTGTGTGCCTTCTTCGGCTTGGACGG AGGACTCCAATGGCCATTATCTTCTTGTTGATCTTCCTGATTTTAAAAAGGAAGAAGTGAAGCTTCAAGTTGATAACTCTGGGCAGATAGTGGTGAGCGG AGAGAGGTTTGTGAACAACAACAGCAAAGTAATATATTTCGAGCAAAAATTTAAGCTTCCAGAGAACTCAGATACTGATAAGATCACTGGAAAATTTGAT GGTGAGATTCTGTATGTAACTGTTCCAAAGCAAGAAGAAACGTCCGTAGAGCCTGAATATCAAAACACCGCCACCGCCACCGCCACCGCTACCGCTACCG GTGATGAAAATCACAGAAGGTTAGAAGAGAAGGGAAGCATGGATAGTTACAGACTTTTTTCAAGGAAATATTGGCGACAGGAGGATGAGGCTACACCATT AGAGAAGGCCATGGAGATGATAAAGAAAAACAAGGGGATTTTGCTTACTGCCGTTATAGCATTTTCTCTTGGGATAATAGTGACTCGCCATAAGTTGGAA TCTGGAGGAGAATAA
AA sequence Show only first row Show all	>Potri.015G064800.1 pacid=42776674 polypeptide=Potri.015G064800.1.p locus=Potri.015G064800 ID=Potri.015G064800.1.v4.1 annot-version=v4.1 MANNGGMRSGGIADRTRSRSHVVEECVPSSAWTEDSNGHYLLVDLPDFKKEEVKLQVDNSGQIVVSGERFVNNNSKVIYFEQKFKLPENSDTDKITGKFD GEILYVTVPKQEETSVEPEYQNTATATATATATGDENHRRLEEKGSMDSYRLFSRKYWRQEDEATPLEKAMEMIKKNKGILLTAVIAFSLGIIVTRHKLE SGGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07400			HSP20-like chaperones superfam...		Potri.015G064800 [exp]	0	1
					Potri.004G047566 [exp]	1.73	0.7836
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.001G239650 [exp]	4.47	0.7688
AT5G03620			Subtilisin-like serine endopep...		Potri.006G114500 [exp]	7.14	0.7705
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G197200 [exp]	10.09	0.7447
					Potri.010G183951 [exp]	14.49	0.7417
AT2G02250		ATPP2-B2	phloem protein 2-B2 (.1)		Potri.018G016100 [exp]	17.20	0.7385
AT4G23980	ARF	ARF9	auxin response factor 9 (.1.2)		Potri.014G100100 [exp]	18.33	0.7058
AT4G03140			NAD(P)-binding Rossmann-fold s...		Potri.014G135510 [exp]	32.32	0.7298
					Potri.004G015401 [exp]	34.49	0.7225
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Potri.018G082900 [exp]	35.94	0.6940

Compare expression of checked genes

Potri.015G064800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.