Plant FIBer expression Database

Potri.015G064900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004267
[exp]
43 / 3e-06 AT5G62750 56 / 5e-11 unknown protein
Lus10042178
[exp]
42 / 7e-06 AT5G62750 54 / 3e-10 unknown protein
PFAM info
Representative CDS sequence
>Potri.015G064900.1 pacid=42775850 polypeptide=Potri.015G064900.1.p locus=Potri.015G064900 ID=Potri.015G064900.1.v4.1 annot-version=v4.1
ATGGGAGAGAATGAGGGAGCTGAGAAAAAAGAGAAGCATGAAAAGGGTGACGACGAGAAAGAAGAGAAGGGAGAGGAGAAAACCAAAGACAGGAAGAAGA
AAGACAAGGAAAGTAAAGATAAAAAGGATAAAGAAGATGGTGAGAAGGGGAAGAAGAACAAGAACCCTGAAGATAAGAAGGACCCTGCGAAGCTAAGGGC
CAAGCTACAGAAGCTCGACGCCAAGATGGAGGCACTGTCCAAGAAAAGGGAGGATATTCTTAAACTTCTTCAAGAAGTTGAAATCAATGTCACAGAAGCA
AGTGGAGAGGCCGTCTAG
AA sequence
>Potri.015G064900.1 pacid=42775850 polypeptide=Potri.015G064900.1.p locus=Potri.015G064900 ID=Potri.015G064900.1.v4.1 annot-version=v4.1
MGENEGAEKKEKHEKGDDEKEEKGEEKTKDRKKKDKESKDKKDKEDGEKGKKNKNPEDKKDPAKLRAKLQKLDAKMEALSKKREDILKLLQEVEINVTEA
SGEAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G064900
[exp]
0 1
ATCG01300 ATCG01300.1, RP... ribosomal protein L23 (.1) Potri.004G104101
[exp]
20.78 1.0000
AT3G17060 Pectin lyase-like superfamily ... Potri.008G104800
[exp]
27.27 1.0000
AT1G01460 ATPIPK11 Phosphatidylinositol-4-phospha... Potri.014G093300
[exp]
49.95 0.9395
AT3G02310 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K... Potri.004G115500
[exp]
51.39 1.0000
AT1G15460 ATBOR4 ARABIDOPSIS THALIANA REQUIRES ... Potri.006G249800
[exp]
51.96 1.0000
AT5G28780 PIF1 helicase (.1) Potri.006G157501
[exp]
53.49 1.0000
AT1G02790 PGA4 polygalacturonase 4 (.1) Potri.010G011200
[exp]
59.12 1.0000
AT1G68610 PCR11 PLANT CADMIUM RESISTANCE 11 (.... Potri.010G127700
[exp]
61.31 1.0000
AT2G38300 GARP myb-like HTH transcriptional r... Potri.011G067150
[exp]
62.20 1.0000
AT3G61690 nucleotidyltransferases (.1) Potri.011G116501
[exp]
63.63 1.0000

Potri.015G064900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.