Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01470 136 / 4e-38 HD HD-ZIP-1, HAT5, ATHB1, ATHB-1 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) AT4G40060 132 / 2e-36 HD ATHB16 ,ATHB-16 homeobox protein 16 (.1) AT2G22430 132 / 3e-36 HD ATHB6 homeobox protein 6 (.1) AT1G69780 129 / 5e-35 HD ATHB13 Homeobox-leucine zipper protein family (.1) AT5G65310 127 / 2e-34 HD ATHB-5, ATHB5 homeobox protein 5 (.1.2) AT5G15150 126 / 7e-34 HD ATHB3, HAT7, ATHB-3 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) AT3G01220 125 / 1e-33 HD ATHB20 homeobox protein 20 (.1) AT1G26960 110 / 2e-28 HD ATHB23 homeobox protein 23 (.1) AT1G27045 103 / 4e-26 ATHB54 homeobox protein 54, Homeobox-leucine zipper protein family (.1) AT3G61890 103 / 6e-26 HD ATHB12, ATHB-12 ARABIDOPSIS THALIANA HOMEOBOX 12, homeobox 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G070900 [exp] 431 / 7e-153 AT3G01470 145 / 1e-41 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Potri.008G194400 [exp] 190 / 2e-58 AT5G15150 122 / 1e-32 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.005G071900 [exp] 134 / 1e-36 AT2G22430 248 / 6e-81 homeobox protein 6 (.1) Potri.007G097100 [exp] 134 / 1e-36 AT2G22430 250 / 9e-82 homeobox protein 6 (.1) Potri.002G100600 [exp] 130 / 6e-36 AT4G40060 191 / 1e-59 homeobox protein 16 (.1) Potri.017G081700 [exp] 129 / 3e-35 AT5G15150 248 / 5e-81 HOMEOBOX FROM ARABIDOPSIS THALIANA 7, homeobox 3 (.1) Potri.010G093400 [exp] 127 / 3e-34 AT1G69780 308 / 5e-105 Homeobox-leucine zipper protein family (.1) Potri.008G148200 [exp] 123 / 5e-33 AT1G69780 333 / 6e-115 Homeobox-leucine zipper protein family (.1) Potri.005G161500 [exp] 122 / 6e-33 AT4G40060 187 / 4e-58 homeobox protein 16 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042180 [exp] 288 / 1e-96 AT3G01470 159 / 6e-47 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10004270 [exp] 285 / 2e-95 AT3G01470 152 / 5e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036674 [exp] 235 / 5e-76 AT3G01470 153 / 8e-45 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10033102 [exp] 230 / 3e-74 AT3G01470 151 / 4e-44 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10037218 [exp] 137 / 4e-38 AT3G01470 140 / 7e-40 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10022225 [exp] 135 / 1e-37 AT3G01470 270 / 2e-90 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10008795 [exp] 135 / 2e-37 AT3G01470 261 / 3e-87 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10036709 [exp] 134 / 4e-37 AT3G01470 139 / 2e-39 HOMEODOMAIN PROTEIN FROM ARABIDOIPSIS THALIANA 5, ARABIDOPSIS THALIANA HOMEOBOX 1, homeobox 1 (.1) Lus10023159 [exp] 132 / 3e-36 AT4G40060 220 / 1e-70 homeobox protein 16 (.1) Lus10012845 [exp] 130 / 9e-36 AT1G69780 280 / 1e-94 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.015G065400.1 pacid=42774762 polypeptide=Potri.015G065400.1.p locus=Potri.015G065400 ID=Potri.015G065400.1.v4.1 annot-version=v4.1 ATGGCGGGTGGTACCGGTGGTTCTAATTCCAATTTGTCTGTTTTGCTTCAAAGCCAAAGAGGCCCTTGTGCTGCTTCACAACCTCTTGAATCTTTTTTCC TTTCTGGCTCTTCTCCTTCTTTTCTTGGTTCAAGATCCATGATGAGTTTTGAAGATGTTCATCAAGCAAACGGATCAACCAGGCCTTTTTTCCGCTCGTT TGATCACGAAGACAATGGAGACGATGATCTGGATGAATATTTTCATCAACCTGAAAAGAAGAGGAGACTTACTGTTGATCAAGTTCAGTTTCTTGAAAAG AGTTTTGAGCTTGAGAACAAGCTTGAACCTGAAAGGAAAATCCAGCTTGCAAAGGATCTTGGCCTTCAGCCGCGTCAGGTTGCTATATGGTTTCAAAACC GCCGAGCAAGATGGAAGACTAAACAGCTGGAAAAGGATTATGACGTTTTGCAATCTAGCTACAATAGCCTTAAGGCTGACTATGACAACCTCCTCAAGGA GAAGGAGAAACTAAAAGCTGAGGTTAATCTTCTCACCGACAAGTTGCTCCTCAAAGAGAAAGAGAAGGGAATCTCAGAATTGTCTGATAAAGATGCATTA TCGCAAGAGCCACCTAAAAGGGCTATAGCTGATTCAGCTTCCGAGGGTGAAGTGTCGAAAATCTCAACAGTGGCCTGTAAGCAGGAAGATATCAGCTCAG CCAAAAGCGACATATTTGATTCAGACAGCCCACATTACGCTGATGGGGTGCATTCCTCACTCTTAGAGGCAGGAGATTCTTCATATGTTTTCGAACCCGA TCAATCAGATTTGTCACAAGATGAAGAAGATAACTTTAGCAAGAGCTTATTGCCTCCATACGTCTTTCCGAAGCTTGAAGATGACGATTACTCTGACCCG CCTGCAAGTTTTGAAGATCATGCCTTTTGGTCCTGGTCATACTAA
AA sequence Show only first row Show all	>Potri.015G065400.1 pacid=42774762 polypeptide=Potri.015G065400.1.p locus=Potri.015G065400 ID=Potri.015G065400.1.v4.1 annot-version=v4.1 MAGGTGGSNSNLSVLLQSQRGPCAASQPLESFFLSGSSPSFLGSRSMMSFEDVHQANGSTRPFFRSFDHEDNGDDDLDEYFHQPEKKRRLTVDQVQFLEK SFELENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQSSYNSLKADYDNLLKEKEKLKAEVNLLTDKLLLKEKEKGISELSDKDAL SQEPPKRAIADSASEGEVSKISTVACKQEDISSAKSDIFDSDSPHYADGVHSSLLEAGDSSYVFEPDQSDLSQDEEDNFSKSLLPPYVFPKLEDDDYSDP PASFEDHAFWSWSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Potri.015G065400 [exp]	0	1
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.013G114600 [exp]	4.00	0.8945
AT1G06570		HPPD, HPD, PDS1	4-hydroxyphenylpyruvate dioxyg...		Potri.002G057400 [exp]	4.47	0.8972	PDS1.2
AT3G49055			unknown protein		Potri.015G146100 [exp]	4.58	0.8961
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.010G157900 [exp]	4.89	0.8672
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150000 [exp]	5.19	0.8749
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.010G094300 [exp]	8.00	0.8651	KUP6.2
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Potri.018G114100 [exp]	10.09	0.8961
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	10.58	0.8771
AT1G54130		AT-RSH3, RSH3, ...	RELA/SPOT homolog 3 (.1)		Potri.001G168200 [exp]	10.90	0.8792	Pt-RSH2.3
AT4G39700			Heavy metal transport/detoxifi...		Potri.010G005300 [exp]	11.22	0.8793

Compare expression of checked genes

Potri.015G065400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.