Plant FIBer expression Database

Potri.015G065500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G62720 278 / 8e-95 Integral membrane HPP family protein (.1.2)
AT3G47980 255 / 1e-85 Integral membrane HPP family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036673
[exp]
283 / 9e-97 AT5G62720 258 / 3e-87 Integral membrane HPP family protein (.1.2)
Lus10033103
[exp]
254 / 7e-85 AT5G62720 239 / 3e-79 Integral membrane HPP family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0307 FUSC PF04982 HPP HPP family
Representative CDS sequence
>Potri.015G065500.1 pacid=42775734 polypeptide=Potri.015G065500.1.p locus=Potri.015G065500 ID=Potri.015G065500.1.v4.1 annot-version=v4.1
ATGGGAATGCAGGTCAGGGCTAGTTATCATCATCATCAAAATGCTTGTATGCCACCAACATTACCAGTACCATCAACAGCTTTGAGTTTGTGTTCTTCAT
CTCTCTCTCCCTTTATTCGAAGCAGCGGCAACAAGATTAATTTAGAGAGATTATCTCCTGGTTTAAGTTTTTTTAGTAGCAAAATCACAAGGACTAAACA
TGGGATTGCGGCATCTAGCAATGTGTCTGCACCACTTTGGGACTCCTGGAAACCTGACAACACCCCTGCGTCTTCACCGTCTTTCAGTGATATCTTTTGG
CCCTCTGCAGGGGCATTTGCAGCCATGGCAATATTTGGAAAGATGGACCAAATACTGGCGCCAAAAGGGATTTCAATGACAATTGCACCCTTAGGAGCTG
TTTCTGCTGTTCTATTTGTCACTCCCTCATCCCCTGGTGCACGGAAGTATAATATGTTCATGGCTCAGATAGGTTGCGCAGCCATTGGTGTCATTGCATT
CTCACTATTTGGGCCCAGTTGGCTAGCTAGAAGTGTTGCCCTTGCTGCTTCCATTGCTTTCATGGTCTATACACGTTCCACCCATCCACCAGCTGCAAGT
TTGCCACTTTTGTTCATTGATGGAGCTAGGTTTCACCACTTGAATTTTTGGTATGCTTTGTTCCCTGGTGCTGCTGGATGCATCATCCTTTGTTTGATTC
AAGAGATTGTGTGCTATTTGAAGGACAACCTCAAATTTTAA
AA sequence
>Potri.015G065500.1 pacid=42775734 polypeptide=Potri.015G065500.1.p locus=Potri.015G065500 ID=Potri.015G065500.1.v4.1 annot-version=v4.1
MGMQVRASYHHHQNACMPPTLPVPSTALSLCSSSLSPFIRSSGNKINLERLSPGLSFFSSKITRTKHGIAASSNVSAPLWDSWKPDNTPASSPSFSDIFW
PSAGAFAAMAIFGKMDQILAPKGISMTIAPLGAVSAVLFVTPSSPGARKYNMFMAQIGCAAIGVIAFSLFGPSWLARSVALAASIAFMVYTRSTHPPAAS
LPLLFIDGARFHHLNFWYALFPGAAGCIILCLIQEIVCYLKDNLKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G62720 Integral membrane HPP family p... Potri.015G065500
[exp]
0 1
AT1G67480 Galactose oxidase/kelch repeat... Potri.010G059200
[exp]
2.00 0.8298
Potri.012G106675
[exp]
38.96 0.7615
AT1G03670 ankyrin repeat family protein ... Potri.018G077500
[exp]
39.49 0.7921
AT4G32980 HD ATH1 homeobox gene 1 (.1) Potri.006G230700
[exp]
44.79 0.7871
AT3G14260 Protein of unknown function (D... Potri.003G072200
[exp]
46.20 0.7522
AT3G14840 Leucine-rich repeat transmembr... Potri.001G385500
[exp]
51.61 0.7678
AT2G22400 S-adenosyl-L-methionine-depend... Potri.007G096100
[exp]
68.81 0.7344
AT5G13980 Glycosyl hydrolase family 38 p... Potri.014G143600
[exp]
70.45 0.7527
AT1G04270 RPS15 cytosolic ribosomal protein S1... Potri.005G055534
[exp]
76.00 0.7335
AT5G27550 P-loop containing nucleoside t... Potri.005G031850
[exp]
80.60 0.7347

Potri.015G065500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.