Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 258 / 1e-86 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 254 / 7e-85 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 250 / 2e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 249 / 4e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 244 / 4e-81 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 211 / 1e-67 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 207 / 6e-66 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 205 / 6e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G03140 205 / 1e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 201 / 2e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G065700 [exp] 305 / 5e-105 AT2G47140 248 / 1e-82 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105700 [exp] 300 / 9e-103 AT2G47140 251 / 9e-84 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105600 [exp] 298 / 5e-102 AT2G47140 230 / 1e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G104800 [exp] 295 / 1e-100 AT2G47140 243 / 2e-80 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G115300 [exp] 261 / 1e-87 AT2G47140 346 / 3e-121 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 241 / 1e-79 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 240 / 3e-79 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 236 / 3e-77 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 234 / 5e-77 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042181 [exp] 317 / 2e-109 AT2G47130 255 / 3e-85 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 252 / 6e-84 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 251 / 9e-84 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 242 / 6e-80 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 240 / 4e-79 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 223 / 4e-72 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 222 / 6e-72 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 223 / 7e-72 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 221 / 2e-71 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 220 / 3e-71 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.015G065600.1 pacid=42776410 polypeptide=Potri.015G065600.1.p locus=Potri.015G065600 ID=Potri.015G065600.1.v4.1 annot-version=v4.1 ATGGCAGAAACCTCGTCGACACCGTCCGATAACAATAAGCTAGCAGGCAAAGTGGCAATAATCACAGGCGGCGCAAGTGGAATTGGCGAAGCCACTGCCC GTCTTTTTGCCCAGCACGGTGCTCTTATCGTGGTTATTGCTGATATCCAAGATGAATTAGGCCACCAAGTAGCTACATCAATTGGACAACAGAAGTGTAG CTACATGCACTGTGATGTTACTGATGAAGAGCAAGTGAAGTCATTAGTGGAGTGGACGGTCAAGAATTTTGGTCGGCTCGACATAATGTTCAGCAATGCC GGAATTCTTGGTAGCTCAGATCAGACCATCCTAAATCTTGATCTTTCAGGATTTGACCGTCTATTTGCAATCAATGCACGTGGAATGGCCACCTGCGTTA AGCATGCTGCTCGCGTAATGGTTGAGCACCGCCTGAGAGGAAGCATAGTGTGCACGGCTAGCGTGGCTGCTAGCAATGGAGGCAGAAGGCGAACTGACTA CCACATGTCAAAGCACGCCGTGCTAGGGCTGGTAAGATCAGCAAGCATGCAGCTGGGGGTGCACGGCATTAGGGTGAACTGCGTCTCCCCATATGGGCTG GTGACGCCGATGACACTCCACGCGCACAGGAAGGGTGTGGAGGAGCTTGAGAACATGTATGAGACCAATATGAGCTTGAAAGGAGCGGCTTTGACAGCAA AACATGTGGCAGATGCTGTGCTTTTTCTTGCATGCAATGATTCAGAAATGGTCACTGGGCATGATCTTCTGGTTGATGGAGGATATCGAATTCAATGA
AA sequence Show only first row Show all	>Potri.015G065600.1 pacid=42776410 polypeptide=Potri.015G065600.1.p locus=Potri.015G065600 ID=Potri.015G065600.1.v4.1 annot-version=v4.1 MAETSSTPSDNNKLAGKVAIITGGASGIGEATARLFAQHGALIVVIADIQDELGHQVATSIGQQKCSYMHCDVTDEEQVKSLVEWTVKNFGRLDIMFSNA GILGSSDQTILNLDLSGFDRLFAINARGMATCVKHAARVMVEHRLRGSIVCTASVAASNGGRRRTDYHMSKHAVLGLVRSASMQLGVHGIRVNCVSPYGL VTPMTLHAHRKGVEELENMYETNMSLKGAALTAKHVADAVLFLACNDSEMVTGHDLLVDGGYRIQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065600 [exp]	0	1
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Potri.001G398200 [exp]	1.00	0.9833
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135500 [exp]	1.41	0.9751
AT5G02160			unknown protein		Potri.006G087701 [exp]	3.00	0.9707
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.017G017500 [exp]	8.00	0.9616
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Potri.001G403300 [exp]	9.16	0.9494	PORA.2
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.016G051100 [exp]	9.48	0.9670
AT4G13030			P-loop containing nucleoside t...		Potri.014G124300 [exp]	14.49	0.9493
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Potri.018G063300 [exp]	14.83	0.9334	Pt-PRXQ.2,PtrcPrx_Q.2
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Potri.011G031300 [exp]	16.73	0.9552	Pt-PSBQ2.2
AT1G75280			NmrA-like negative transcripti...		Potri.013G103850 [exp]	20.19	0.9668

Compare expression of checked genes

Potri.015G065600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.