Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 248 / 2e-82 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 235 / 1e-77 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 231 / 8e-76 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 231 / 9e-76 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G29260 223 / 1e-72 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 211 / 1e-67 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 206 / 3e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 203 / 2e-64 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G42960 201 / 5e-64 ASD, ATA1 TAPETUM1, TAPETUM 1 (.1) AT4G03140 201 / 6e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G104800 [exp] 410 / 2e-146 AT2G47140 243 / 2e-80 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105700 [exp] 402 / 2e-143 AT2G47140 251 / 9e-84 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.012G105600 [exp] 393 / 2e-139 AT2G47140 230 / 1e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G065600 [exp] 306 / 3e-105 AT2G47140 258 / 1e-86 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G115300 [exp] 246 / 9e-82 AT2G47140 346 / 3e-121 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 246 / 2e-81 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 231 / 2e-75 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 228 / 1e-74 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 225 / 2e-73 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042181 [exp] 286 / 3e-97 AT2G47130 255 / 3e-85 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10009992 [exp] 259 / 5e-87 AT2G47140 345 / 1e-120 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10038057 [exp] 255 / 4e-85 AT2G47140 341 / 4e-119 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 242 / 8e-80 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 241 / 1e-79 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10029369 [exp] 210 / 2e-67 AT3G51680 226 / 3e-73 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 208 / 2e-66 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 206 / 6e-66 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014227 [exp] 206 / 9e-66 AT3G51680 231 / 3e-75 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016178 [exp] 204 / 4e-65 AT2G47140 210 / 2e-67 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08659 [poplar] [flax] KR KR domain
Representative CDS sequence Show only first row Show all	>Potri.015G065700.1 pacid=42775813 polypeptide=Potri.015G065700.1.p locus=Potri.015G065700 ID=Potri.015G065700.1.v4.1 annot-version=v4.1 ATGGCATGCCAGCATAAAGTTCAAGACAAGGTTGCCATAGTCACAGGAGGAGCTAGTGGCATTGGCGAGGCCACTGCACTTCTTTTCGCTGAAAACGGTG CACGCGCAGTCGTGATCGCCGATGTCCAAGATGAAAGAGGTAAAAAACTTGCCGAATCAATTGGTTCTGATCGTTCCACCTTTATCCACTGCGACGTAAC CGATGAGAAGCAAGTGAAATCCCTGGTGGAATCCACTGTTGCGCTTTATGGTCACCTTGACATCATGTTTTGCAACGCTGGAACCCTCAGCTTCGATAAA CAGACCGTTGTCGACTTCGACCTGGACATGTACGAGAAACTTTTTGCAGTAAATGTGCGTGGTGTGGCAGCAAGTGTAAAGCATGCGGCGCGTGCTATGG TGGAAGGAGGTAGAAAGGGTAGCATCATTTGCACAGCCAGCATCGCAGCCAATACTGGTGGAAGCATCCATACAGATTATGTAATGTCCAAGTGTGCGGT ACTGGGGCTGGTAAAGTCTGCCAGTTATCAGTTGGGTGAGCATGGAATACGAGTGAATTGTGTGTCGCCAGGGGCAGTGGCGACGCCTCTAATATGTAAG GCCTTTGGCATGGGAGTCGAGGAGGTGGAGAAGACTTTTGAGTCGACTTCGTGTTTGAAAGGGGTGTTGAAGCTGAAGCATGTGGCTAATGCTGTGTTGT TTCTTGCTTCTGAGGATTCTGAGTTTGTAACAGGACATAATTTGGTTGTAGATGGGGGATTTACATTTCCTCAATCAAGCCAATTCAATTCTTAG
AA sequence Show only first row Show all	>Potri.015G065700.1 pacid=42775813 polypeptide=Potri.015G065700.1.p locus=Potri.015G065700 ID=Potri.015G065700.1.v4.1 annot-version=v4.1 MACQHKVQDKVAIVTGGASGIGEATALLFAENGARAVVIADVQDERGKKLAESIGSDRSTFIHCDVTDEKQVKSLVESTVALYGHLDIMFCNAGTLSFDK QTVVDFDLDMYEKLFAVNVRGVAASVKHAARAMVEGGRKGSIICTASIAANTGGSIHTDYVMSKCAVLGLVKSASYQLGEHGIRVNCVSPGAVATPLICK AFGMGVEEVEKTFESTSCLKGVLKLKHVANAVLFLASEDSEFVTGHNLVVDGGFTFPQSSQFNS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065700 [exp]	0	1
AT1G07150		MAPKKK13	mitogen-activated protein kina...		Potri.001G278600 [exp]	12.24	0.6812
AT3G17790		ATACP5, ATPAP17...	purple acid phosphatase 17 (.1...		Potri.012G042200 [exp]	14.07	0.6853	ACP5.3
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.012G103200 [exp]	19.05	0.6576
					Potri.014G103100 [exp]	25.78	0.6704
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.011G072100 [exp]	40.59	0.6410
AT3G25400			unknown protein		Potri.014G148200 [exp]	43.98	0.6645
AT1G12940		ATNRT2.5	nitrate transporter2.5 (.1)		Potri.012G087700 [exp]	44.09	0.6204
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.015G003500 [exp]	54.20	0.6499
AT5G09550			GDP dissociation inhibitor fam...		Potri.007G115300 [exp]	72.80	0.5987
AT5G63060			Sec14p-like phosphatidylinosit...		Potri.012G088350 [exp]	76.64	0.6146

Compare expression of checked genes

Potri.015G065700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.