Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26780 291 / 5e-97 MGE2, AR192 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) AT5G55200 251 / 5e-82 MGE1 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) AT5G17710 59 / 2e-09 EMB1241 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) AT1G36390 50 / 1e-06 Co-chaperone GrpE family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089000 [exp] 456 / 4e-162 AT4G26780 284 / 1e-94 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Potri.013G067900 [exp] 61 / 4e-10 AT5G17710 313 / 9e-106 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Potri.005G171201 [exp] 50 / 8e-07 AT1G36390 213 / 7e-68 Co-chaperone GrpE family protein (.1.2) Potri.002G090000 [exp] 50 / 8e-07 AT1G36390 233 / 8e-76 Co-chaperone GrpE family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032565 [exp] 310 / 1e-104 AT4G26780 299 / 1e-100 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10043180 [exp] 297 / 2e-99 AT4G26780 281 / 2e-93 mitochondrial GrpE 2, Co-chaperone GrpE family protein (.1) Lus10010247 [exp] 287 / 1e-96 AT5G55200 270 / 7e-91 mitochondrial GrpE 1, Co-chaperone GrpE family protein (.1) Lus10000783 [exp] 281 / 2e-90 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1) Lus10029654 [exp] 55 / 4e-08 AT5G17710 215 / 2e-67 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10042696 [exp] 55 / 5e-08 AT1G36390 210 / 5e-66 Co-chaperone GrpE family protein (.1.2) Lus10024760 [exp] 50 / 8e-07 AT1G36390 209 / 2e-66 Co-chaperone GrpE family protein (.1.2) Lus10028034 [exp] 47 / 9e-06 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2) Lus10003741 [exp] 47 / 2e-05 AT5G17710 222 / 3e-70 embryo defective 1241, Co-chaperone GrpE family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01025 [poplar] [flax] GrpE GrpE
Representative CDS sequence Show only first row Show all	>Potri.015G065800.1 pacid=42775782 polypeptide=Potri.015G065800.1.p locus=Potri.015G065800 ID=Potri.015G065800.1.v4.1 annot-version=v4.1 ATGTTGATGACCAGGATGTTGTCACGCCTTTCGAGGAGCGTGGGCCGACGCTCTCTGGTTCTACACTCGCCGTCTCCGTCCCATAATCACCACCTCTTGC CGATCCTCTCTCATCAGTTTCACTCTCTTGTTCATGAGTATGGATATCCTGACAAGTGTATTACAAGGAAGGTGTGTCTGTTTCATCATTCAGCACTAAA CTCCCCTCCTTTTCAAAATTTTGGGTTCACTTCATCTGCATCTCCTGAGCCTACTGAAAAGGAGCAGGGGAGTGCTGTAGACTCCAACTGTGATCCCACA AATGCAGAGTCAGGAAAAACAAATGGAAGTGCAGACCTTTCTGATAAGACAGAAGATTCAGTTTTGCATGAGACCAAAGAGTCAGGTTTCAACTCAGAGT CCCAACAAACCATATCCCGATCTGGTAAAAGGAGGAGAGTTACTAAACGAACTGCCTATTCTGATTCAGATTCTGAGGCTGGGAGTGATCTATCTATGGA TGATTTGGTGAAGCTTGTGGCGGAGAAGGAGGAACTCCTGGAGGCAAAGCATAAGGAGATTGAGACAATTCAAGATAAAGTTCTCCGCGCATATGCTGAA ATGGAAAATGTCAAGGAAAGAACAAAACGTGAAGCAGAGAACTCTAAAAAGTTTGCCATACAGAATTTTGCAAAGAGCCTACTTGATGTTGCAGACAATT TGGGAAGAGCTTCATCAGTTGTCAAAGGCAATTTCTCAAAAATCGATGTTTCTAATGACACTGCCCAGGTAGTGCCACTCCTTAAGACGCTTTTGGAAGG AGTTGAAATGACTGAGAAACAGCTTGGAGAGGTATTTAAGAAGTATGGAATAGAGAAATTTGATCCAACAAATGAGCCATTTGATCCACATAGGCATAAT GCAATATTCCAGGTTCCAGATGCTTCTAAGCCTCCAGGGACAGTAGCTGCTGTTCTCAAGGCAGGATACATGCTCCATGACAGAGTTATTCGACCAGCTG AAGTCGGCGTTACTCGAGAAGTGGAGAATGGTGCTGAAGCAAATGAATAG
AA sequence Show only first row Show all	>Potri.015G065800.1 pacid=42775782 polypeptide=Potri.015G065800.1.p locus=Potri.015G065800 ID=Potri.015G065800.1.v4.1 annot-version=v4.1 MLMTRMLSRLSRSVGRRSLVLHSPSPSHNHHLLPILSHQFHSLVHEYGYPDKCITRKVCLFHHSALNSPPFQNFGFTSSASPEPTEKEQGSAVDSNCDPT NAESGKTNGSADLSDKTEDSVLHETKESGFNSESQQTISRSGKRRRVTKRTAYSDSDSEAGSDLSMDDLVKLVAEKEELLEAKHKEIETIQDKVLRAYAE MENVKERTKREAENSKKFAIQNFAKSLLDVADNLGRASSVVKGNFSKIDVSNDTAQVVPLLKTLLEGVEMTEKQLGEVFKKYGIEKFDPTNEPFDPHRHN AIFQVPDASKPPGTVAAVLKAGYMLHDRVIRPAEVGVTREVENGAEANE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26780		MGE2, AR192	mitochondrial GrpE 2, Co-chape...		Potri.015G065800 [exp]	0	1
AT5G11340			Acyl-CoA N-acyltransferases (N...		Potri.006G248900 [exp]	1.00	0.9118
AT2G18410			unknown protein		Potri.004G099000 [exp]	2.00	0.8828
AT4G22140		EBS	EARLY BOLTING IN SHORT DAYS, P...		Potri.002G226000 [exp]	3.87	0.8941
AT4G14000			Putative methyltransferase fam...		Potri.001G321100 [exp]	4.69	0.8958
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Potri.003G080900 [exp]	7.48	0.8730	Pt-CARA.2
AT4G00530			unknown protein		Potri.014G082800 [exp]	8.00	0.8665
AT4G34360			S-adenosyl-L-methionine-depend...		Potri.004G150200 [exp]	8.06	0.8784
AT5G41010		NRPE12, NRPD12,...	DNA directed RNA polymerase, 7...		Potri.011G144800 [exp]	8.48	0.8434
AT5G62290			nucleotide-sensitive chloride ...		Potri.012G128500 [exp]	12.48	0.8742
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Potri.003G193600 [exp]	13.03	0.8585

Compare expression of checked genes

Potri.015G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.