Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55220 664 / 0 trigger factor type chaperone family protein (.1) AT2G37030 42 / 0.0001 SAUR-like auxin-responsive protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010250 [exp] 657 / 0 AT5G55220 602 / 0.0 trigger factor type chaperone family protein (.1) Lus10000783 [exp] 381 / 1e-126 AT5G55220 336 / 5e-109 trigger factor type chaperone family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05697 [poplar] [flax] Trigger_N Bacterial trigger factor protein (TF) CL0262 [poplar] [flax] Trigger_C PF05698 [poplar] [flax] Trigger_C Bacterial trigger factor protein (TF) C-terminus
Representative CDS sequence Show only first row Show all	>Potri.015G065900.1 pacid=42775355 polypeptide=Potri.015G065900.1.p locus=Potri.015G065900 ID=Potri.015G065900.1.v4.1 annot-version=v4.1 ATGGAGCTCAGTGTCAGCTCCACTTCATCTGCTCTCCTCAAACTTAACCACCATTTTCTCTCCAAAAACTCTCTTCCCATCAAAATCCCAACTCTCCATT TCGCAAATGACAAAAAGCTCCCTTCGTTTTACCGCCAAACCAAACGCCCTTCGTTCCTTCGTAAATTCGCTTCTCCAGCTTCTTCATCAATTGCTGTTGG ACCCAGCAATGACCGCCTTCCTGCCGATATTAAAGTCACTGAAACCCCAGAGCCCAACTCAAGAATAAGACTGAGTGTAGAAGTTCCACCAGCTGTATGT GAAGATTGTTACAAAAGGGTCATGAATGAGTTCACGAAACAAGCTAAGGTGCCTGGATTTCGTCCTGGAAAGGATGTCCCAGAGAGCATTCTTTTAAGTT ATGTTGGGAAACAAAATGTTCAAAAGGCTACAGTTGAATCTATTTTGAAAAGGACCCTTCCACATGCCATGTCTTCGGTGACTGGAAGGGCTTTGAGGGA TTCGGTGCAAATAGCAACCAAATTCACAGATATGGAGAAGACATATTTATCTCTCAACTCTCTCAGATATGATGTTGTTGTTGATGTGGCACCTGAAGTC ATATGGATCCCTGAGAATGGCTACAGAGATTTGAAGATTGTTGTTGAAATAGATAGTGAGATAGATGCACAGAGAGCTTCTGAACAAGAATTAAGACAGC GCCACAAATCCTTGGGTTTGATGAGAATTATAACTGACAGAGGACTACAGATTGGTGATGTTGCAGTACTTGATGTTTCAGCAACAAAAATTGACAAGGA TGAATCAAATGTTCAGAATATTCCAGCTGCAGAGAGTAAAGGTTTTCATTTTGATACAGAGCATGGTGATAGAGTGATACCTGGTTTCCTTGATTCAATA ATAGGGATTCAACGAGGTGAAACAAAGTCCTTTCCTCTTGTATTTCCTGAATCATGGAAACAAGAAAATCTCCGTGGTGTTCATGCTCAATTTACTGTGG AATGCAAAGAATTGTTTTATAGAGATCTGCCAGAGTTGGATGACACATTTGCTGACAAACTCCTTCCTGGGTGCACCACCTTGCAGCAGGTCAAGGAATC ACTGTTACAGAAGTTCCTAGAAGTGGAGCAAACAGCAAGAGAACAAGCAACTGATAATGCAATTCTCGACCAGCTTTGCAAGATGGTGGAGATTGATATT CCTCAATCCTTGTTCGAGGAACAAGGTAGGCAGCTTTATGGAGCCAAACTTCTCCAGATTCAGGCAAATATGAAATTAAATGAACAGCAGCTGGCTTCAC TATCAAGTCCAAAGGCAGTTAATGAGTTCCTAGAAAACCAAAAGGAGAATATAACAAGGGTGATAAAACAAAATCTGGCAGTAGGAGATATATTCAAACG TGAAAATTTGCAGTTTTCTACAGAAGATCTTGTCAAAGAGGTTGAGAACTCCATTGCTGAATTCAAACGACATAAACAAGAGTACAATGAGGAGCGTGTG GAGGAACAGGTGCAAGAAGTACTGGAGGGAGCAAAAGTGCTTGAATGGTTAAGAGAACACTCAGAGATTCAATACATAAGCAGGTGA
AA sequence Show only first row Show all	>Potri.015G065900.1 pacid=42775355 polypeptide=Potri.015G065900.1.p locus=Potri.015G065900 ID=Potri.015G065900.1.v4.1 annot-version=v4.1 MELSVSSTSSALLKLNHHFLSKNSLPIKIPTLHFANDKKLPSFYRQTKRPSFLRKFASPASSSIAVGPSNDRLPADIKVTETPEPNSRIRLSVEVPPAVC EDCYKRVMNEFTKQAKVPGFRPGKDVPESILLSYVGKQNVQKATVESILKRTLPHAMSSVTGRALRDSVQIATKFTDMEKTYLSLNSLRYDVVVDVAPEV IWIPENGYRDLKIVVEIDSEIDAQRASEQELRQRHKSLGLMRIITDRGLQIGDVAVLDVSATKIDKDESNVQNIPAAESKGFHFDTEHGDRVIPGFLDSI IGIQRGETKSFPLVFPESWKQENLRGVHAQFTVECKELFYRDLPELDDTFADKLLPGCTTLQQVKESLLQKFLEVEQTAREQATDNAILDQLCKMVEIDI PQSLFEEQGRQLYGAKLLQIQANMKLNEQQLASLSSPKAVNEFLENQKENITRVIKQNLAVGDIFKRENLQFSTEDLVKEVENSIAEFKRHKQEYNEERV EEQVQEVLEGAKVLEWLREHSEIQYISR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	0	1
AT3G05625			Tetratricopeptide repeat (TPR)...		Potri.013G012400 [exp]	1.41	0.9747
AT3G15110			unknown protein		Potri.011G097800 [exp]	1.41	0.9761
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	3.46	0.9691
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	3.87	0.9740
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.004G209700 [exp]	4.00	0.9621
AT1G22700			Tetratricopeptide repeat (TPR)...		Potri.013G114500 [exp]	4.24	0.9659
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	4.47	0.9734
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	6.32	0.9735	Pt-FFC.2
AT2G45770		FRD4, CPFTSY	FERRIC CHELATE REDUCTASE DEFEC...		Potri.014G078800 [exp]	7.74	0.9658	CPFTSY.1
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.006G180100 [exp]	8.24	0.9603

Compare expression of checked genes

Potri.015G065900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.