Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47940 436 / 4e-154 DNAJ heat shock family protein (.1) AT1G10350 385 / 9e-134 DNAJ heat shock family protein (.1) AT1G59725 380 / 3e-132 DNAJ heat shock family protein (.1) AT2G20560 367 / 4e-127 DNAJ heat shock family protein (.1) AT4G28480 361 / 2e-124 DNAJ heat shock family protein (.1.2) AT3G08910 360 / 2e-124 DNAJ heat shock family protein (.1) AT5G01390 345 / 3e-118 DNAJ heat shock family protein (.1.2.3.4) AT5G25530 337 / 5e-115 DNAJ heat shock family protein (.1) AT2G20550 225 / 4e-72 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 162 / 4e-47 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035000 [exp] 390 / 2e-136 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 382 / 3e-133 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 369 / 6e-128 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 354 / 8e-122 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 354 / 8e-122 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 347 / 4e-119 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 343 / 2e-117 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 339 / 5e-116 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 335 / 4e-114 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036668 [exp] 498 / 2e-178 AT3G47940 454 / 6e-161 DNAJ heat shock family protein (.1) Lus10030803 [exp] 392 / 5e-137 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 379 / 3e-131 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1) Lus10005033 [exp] 371 / 2e-128 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 370 / 3e-128 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10017687 [exp] 363 / 2e-125 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10015402 [exp] 360 / 3e-124 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10013981 [exp] 360 / 5e-124 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10021961 [exp] 338 / 5e-116 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 333 / 9e-114 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.015G066100.1 pacid=42775951 polypeptide=Potri.015G066100.1.p locus=Potri.015G066100 ID=Potri.015G066100.1.v4.1 annot-version=v4.1 ATGGGCGTAGATTACTATAACATACTGAAAGTGAACAGAAATGCAAGCGAGGATGATCTGAGGAAATCATATAAACGTTTAGCGATGATTTGGCATCCTG ACAAGAACCCTACCGCTAAAAGAACCGAAGCCGAGGCTAAATTTAAACAAATCTCCGAAGCCTACGATGTCCTCAGTGATCCGCAGAAGCGGCAGATCTA CGATTTGTATGGTGAAGAGGGGTTGAAATCGGGGCAGTGTCCGCCGCCGTCTCCTTCGACGTCCAGGCATTATTTTCAGAGGCAGCACCCCAATCCGTCG TTCAGGTTCAAGCCGAGGAACGCGGAGGATATTTATGAGGAGTTGTTTGGATCGGAGAGTGGTGGTGGTGGTGGGAATGAGAGAGGGAATTATAGTAGAG GGCATTTTAGGAATAATACTAATAATAGCAGCAGCAGCAGCTACTTTGGTAATGGAGGAGACATGAAAAAGCCGAATGCGATTGAGAATTTGCTGCCTTG TAGTTTGGAGGAGCTGTATAAAGGTGCTACGAAGAAGATGAAAATTTGCAGGAACATTTTTGAGGGTACTGGTAGGGTTCGGACTCTTGAAGAGATATTG ACCATTGAGATAAAACCTGGTTGGAAGAAGGGCACAAAAATCACATTTCCTGAGAAGGGCAACCAAGAGCCTGGCATTATCCCTGCAGATATTGTTTTTG TGGTAGATGAAAAACCTCATGCTACTTATGTGAGGGATGGTAATGATCTGGTCATCAAACAGGAGATTACACTGCTGGAGGCTCTCACAGGCAAAACCTT CGACCTGACTACCCTAGATGGAAGGAATATCGTGCTTCCACTGACAGATATTGTCAAACCCGGTGTTGAAGTGGTTGTCCCAAATGAAGGAATGCCAATC TCTAAAGAACCTGGGAAGAAGGGAAATTTGAGAGTCAAGATTGATGTCAGGTACCCATCAAGGCTTACTTCAGAACAAAAATTCGAGCTAAGAAGGGTTT TGGGAGGAGTTTCATGA
AA sequence Show only first row Show all	>Potri.015G066100.1 pacid=42775951 polypeptide=Potri.015G066100.1.p locus=Potri.015G066100 ID=Potri.015G066100.1.v4.1 annot-version=v4.1 MGVDYYNILKVNRNASEDDLRKSYKRLAMIWHPDKNPTAKRTEAEAKFKQISEAYDVLSDPQKRQIYDLYGEEGLKSGQCPPPSPSTSRHYFQRQHPNPS FRFKPRNAEDIYEELFGSESGGGGGNERGNYSRGHFRNNTNNSSSSSYFGNGGDMKKPNAIENLLPCSLEELYKGATKKMKICRNIFEGTGRVRTLEEIL TIEIKPGWKKGTKITFPEKGNQEPGIIPADIVFVVDEKPHATYVRDGNDLVIKQEITLLEALTGKTFDLTTLDGRNIVLPLTDIVKPGVEVVVPNEGMPI SKEPGKKGNLRVKIDVRYPSRLTSEQKFELRRVLGGVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47940			DNAJ heat shock family protein...		Potri.015G066100 [exp]	0	1
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	1.73	0.9147
AT2G38410			ENTH/VHS/GAT family protein (....		Potri.016G131900 [exp]	2.00	0.9147
AT5G60250			zinc finger (C3HC4-type RING f...		Potri.006G104700 [exp]	3.74	0.8909
AT2G44200			CBF1-interacting co-repressor ...		Potri.006G000200 [exp]	4.00	0.9127
AT2G19270			unknown protein		Potri.006G075000 [exp]	6.00	0.9142
AT1G75510			Transcription initiation facto...		Potri.005G233800 [exp]	6.32	0.9060
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Potri.009G165200 [exp]	8.48	0.8951
AT5G19910		MED31	SOH1 family protein (.1.2)		Potri.015G110900 [exp]	8.94	0.8644
					Potri.001G078409 [exp]	9.64	0.8708
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Potri.001G140300 [exp]	10.48	0.8781

Compare expression of checked genes

Potri.015G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.