Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18900 1107 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) AT1G74750 1084 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G31400 191 / 4e-50 GUN1 genomes uncoupled 1 (.1) AT1G79490 189 / 2e-49 EMB2217 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G46580 182 / 9e-48 pentatricopeptide (PPR) repeat-containing protein (.1) AT5G02860 177 / 7e-46 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 173 / 2e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62720 167 / 3e-44 AtNG1 novel gene 1, Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62910 169 / 4e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G30290 171 / 1e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G173400 [exp] 197 / 2e-52 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G193900 [exp] 191 / 2e-50 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.014G118500 [exp] 187 / 8e-49 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.006G271200 [exp] 181 / 4e-48 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G006800 [exp] 180 / 4e-47 AT4G16390 916 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.001G297300 [exp] 181 / 6e-47 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G019000 [exp] 177 / 3e-46 AT4G16390 939 / 0.0 suppressor of variegation 7, pentatricopeptide (PPR) repeat-containing protein (.1) Potri.006G264800 [exp] 179 / 5e-46 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.005G046000 [exp] 176 / 5e-46 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033110 [exp] 1161 / 0 AT1G18900 1091 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3) Lus10037517 [exp] 190 / 5e-50 AT1G79490 1299 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037515 [exp] 190 / 7e-50 AT1G79490 1296 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002871 [exp] 188 / 2e-49 AT1G79490 1295 / 0.0 embryo defective 2217, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004555 [exp] 182 / 1e-47 AT5G46580 960 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000897 [exp] 181 / 2e-47 AT5G46580 945 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10013894 [exp] 177 / 1e-45 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 177 / 3e-45 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10002107 [exp] 174 / 1e-44 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026884 [exp] 171 / 3e-44 AT4G31850 746 / 0.0 proton gradient regulation 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.015G066400.4 pacid=42775957 polypeptide=Potri.015G066400.4.p locus=Potri.015G066400 ID=Potri.015G066400.4.v4.1 annot-version=v4.1 ATGTTAAGGGCAAAGCAACTCGGTAATCTTTCCAGCAGTGCAAGGTCATTTTTTCTAAGTGGTTCGCGGTGCAGTGCTACAGATGGTAGTTCTTCATGCA CTTGCTCTGAAGATGAAACCTGTGTTTCAACAAGGCAGCAACCGAGAAACAGTATTCTACTTGCACAGAAGCCATCCAATTTTGGATCTAAAACTTCAGC AAGAGTAGAAGCCTCAGTTTCAGGAGATGGAAGCAGTTTTCTACTTCCACAAAAAAGGTCCTCCATAGCATCCAAAACATCAGCAAGGGTAGAAAATTCA GTTTCAGGAGATGCCGTAAAGTTAGTGGGCTCTCAAAAAGATGCAAGTGTTGAACACCCAAATTCTTTCCCACAAGTTGCATCTACTCATAGCTCTTGTG GAATGTCAGGTTGTGTTAGTTATGCGATTGGCATTGATATTGCTGAAAAGGATGTAGGACACTCTTCTCCTCCTATTTCAGACCAGTTTGTGAGAGTTGG TATTGCAGCAGTCAGCTTTCTGTCTGATTTAGTGAACTACAAGCTTCCTACATCAGATGGAACTGTAATAAACTCAACCATCAACTGCATGATTGACCCT ACCAGGCAACTTTCCAATATAAAGTCTTCAAATGTAAAACCCATCAGGAGAGAGAACTTCACCAAGGCATATCCAAATTCATCTGCAGAGATACCAGTGG GGTCAAATGCTGCTGTTAACTACAACTCTATGAAGGATAGGGGCAACAAATCAAGTTTTGTTAGAGGTTTCAAACAAGTTTCAAGTATTGCTGCTGATAG TTCATTGGATAGTCATAGTTTACCTTCAGATGCATTTGATAAGAGGAGAACCATACCTCAGAGGTTAAAAGCTCAACCAAATCGGTTAGTGTCAAAATTT AATTCCAATGTAAATACTTCAGATGTAAATGTTGGGAAGCCGTTCACTGATGGTTACAGAAGACCCTCGAGAGATACTAAAATGCCAGCTGTAGTGGCTC GAAGTGCTAGGCAGTTTGTAAGCACTGGGCATGTTGTAGAAAATGTTTCTCAGATATTAAGACAGTTAAGGTGGGGTCCTTCAGCGGAGGAGGCTCTTGT AAATCTTAATTGTCATATGGATGCCTATCAAGCTAACCAAGTTCTAAAACAGCTTCAGGATCATACTGTTGCTCTTGGATTTTTCCATTGGTTGAAACAG CTACCTGGGTTCAAGCATGATGGCTACACTTACACAACCATGGTTGGCATCCTTGGCCGTGCAAAGCAGTTTGTTGCGATTAACAAATTGCTTGATCAGA TGGTCAGGGATGGATGCCAACCTACTGTTGTGACATACAATCGTCTTATTCACAGTTATGGCCGTGCGAACTACCTGAATGATGCAGTTGAAGTGTTCAA TCAAATGCAGAAGGCTGGGTGTGAACCTGACCGAGTCACCTACTGCACACTCATTGATATCCATGCAAAAGCTGGGTTTCTTAATTTTGCTATGGAGATG TATCAAAGAATGCAGGCAGCAGGCCTTTCTCCGGACACATTCACTTATAGTGTTATGATAAACTGCCTTGGAAAAGCTGGCCATTTAGCAGCTGCTGACA AGCTATTTTGTGAGATGATTGAACAAGGTTGTGTTCCCAATTTAGTAACATACAATATCATGATTGCTTTGCAAGCCAAGGCAAGGAATTACCAGAATGC ATTAAAACTTTACCGTGACATGCAGAATGCTGGATTCGAACCTGACAAAGTGACTTACAGCATAGTGATGGAGGTGCTTGGACACTCTGGATATCTTGAT GAAGCAGAAGCAATTTTTTCTGAGATGAAACGGAAGAACTGGGTGCCTGATGAACCTGTCTATGGCCTTCTGGTTGACTTGTGGGGAAAGGCTGGAAATG TTGAAAAGGCTTGGGAATGGTATCAAGCCATGCTCCATGCTGGTTTGTGCCCAAATGTGCCAACTTGCAACTCCCTGCTCAGTGCTTTCCTGAGGGTGAA TCGTCTGCCAGATGCTTATAACTTGCTGCAAAGCATGCTGAACTTGGGTCTAAATCCATCGTTGCAGACTTACACCTTGCTCCTCAGCTGCTGTACAGAG GCACGATCACCTTATGACATGGGATGTTATTGTGAGCTCATGTCAGTCACTGGCCACCCTGCACATATGTTCCTTTCATCTTTGCCGTCAGCTGGACCTG ATGGTCAAAATGTGAGGCATCATGTGAGCAAGTTCTTGGATATGATGCATAGTGAGGATAGAGAGAGCAAGAGGGGACTTGTAGATGCAGTGGTGGACTT CCTTCATAAGTCAGGGCTCAAGGAGGAGGCTGGCTCGGTCTGGGAGATAGCTGCACAGAGGAATGTATATCCAGATGCAGTCAAAGAGAAAAGTTCTTGT TATTGGCTTATTAATCTCCATGTTATGTCTGAAGGCACTGCCGTAACAGCTTTATCTAGAACACTTGCTTGGTTTCGCCGCCAGATGCTAGTCTCAGGTG TTATCCCCAGTCGTATTGATATAGTGACTGGATGGGGCCGTCGGAGCAGGGTGACAGGATCTTCCCTTGTGAGACAGGCAGTGCAGGAATTGCTGCATAT TTTCAGCTTTCCGTTTTTCACAGAAAATGGCAATACTGGGTGTTTTGTAGGGTGCGGAGAACCTCTTAGTAGATGGTTGCTCCAATCTTACGTGGAGCGG ATGCATTTATTGTAA
AA sequence Show only first row Show all	>Potri.015G066400.4 pacid=42775957 polypeptide=Potri.015G066400.4.p locus=Potri.015G066400 ID=Potri.015G066400.4.v4.1 annot-version=v4.1 MLRAKQLGNLSSSARSFFLSGSRCSATDGSSSCTCSEDETCVSTRQQPRNSILLAQKPSNFGSKTSARVEASVSGDGSSFLLPQKRSSIASKTSARVENS VSGDAVKLVGSQKDASVEHPNSFPQVASTHSSCGMSGCVSYAIGIDIAEKDVGHSSPPISDQFVRVGIAAVSFLSDLVNYKLPTSDGTVINSTINCMIDP TRQLSNIKSSNVKPIRRENFTKAYPNSSAEIPVGSNAAVNYNSMKDRGNKSSFVRGFKQVSSIAADSSLDSHSLPSDAFDKRRTIPQRLKAQPNRLVSKF NSNVNTSDVNVGKPFTDGYRRPSRDTKMPAVVARSARQFVSTGHVVENVSQILRQLRWGPSAEEALVNLNCHMDAYQANQVLKQLQDHTVALGFFHWLKQ LPGFKHDGYTYTTMVGILGRAKQFVAINKLLDQMVRDGCQPTVVTYNRLIHSYGRANYLNDAVEVFNQMQKAGCEPDRVTYCTLIDIHAKAGFLNFAMEM YQRMQAAGLSPDTFTYSVMINCLGKAGHLAAADKLFCEMIEQGCVPNLVTYNIMIALQAKARNYQNALKLYRDMQNAGFEPDKVTYSIVMEVLGHSGYLD EAEAIFSEMKRKNWVPDEPVYGLLVDLWGKAGNVEKAWEWYQAMLHAGLCPNVPTCNSLLSAFLRVNRLPDAYNLLQSMLNLGLNPSLQTYTLLLSCCTE ARSPYDMGCYCELMSVTGHPAHMFLSSLPSAGPDGQNVRHHVSKFLDMMHSEDRESKRGLVDAVVDFLHKSGLKEEAGSVWEIAAQRNVYPDAVKEKSSC YWLINLHVMSEGTAVTALSRTLAWFRRQMLVSGVIPSRIDIVTGWGRRSRVTGSSLVRQAVQELLHIFSFPFFTENGNTGCFVGCGEPLSRWLLQSYVER MHLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18900			Pentatricopeptide repeat (PPR)...		Potri.015G066400 [exp]	0	1
AT2G34960		CAT5	cationic amino acid transporte...		Potri.003G154600 [exp]	19.84	0.8652	CAT5.1
AT5G63380			AMP-dependent synthetase and l...		Potri.012G094800 [exp]	22.24	0.8424
AT5G50860			Protein kinase superfamily pro...		Potri.012G103900 [exp]	24.97	0.8169
AT5G58660			2-oxoglutarate (2OG) and Fe(II...		Potri.001G278200 [exp]	32.40	0.8549
AT2G19130			S-locus lectin protein kinase ...		Potri.013G149500 [exp]	33.82	0.8547
AT4G23850		LACS4	long-chain acyl-CoA synthetase...		Potri.003G139700 [exp]	37.94	0.8402
AT1G18390			Protein kinase superfamily pro...		Potri.010G120800 [exp]	38.94	0.8302
AT1G31830			Amino acid permease family pro...		Potri.003G103600 [exp]	41.02	0.8409
AT2G38970			Zinc finger (C3HC4-type RING f...		Potri.001G082150 [exp]	41.78	0.8564
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Potri.002G193900 [exp]	44.07	0.8336

Compare expression of checked genes

Potri.015G066400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.