Plant FIBer expression Database

Potri.015G066500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G47890 1636 / 0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT3G47910 1616 / 0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1.2)
AT2G27630 139 / 6e-33 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT1G65120 131 / 2e-30 Ubiquitin carboxyl-terminal hydrolase-related protein (.1.2)
AT5G51530 130 / 5e-30 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT1G65200 129 / 7e-30 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT1G65160 121 / 9e-30 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
AT1G65110 127 / 2e-29 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT2G27650 126 / 6e-29 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
AT1G65130 125 / 1e-28 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G071900
[exp]
2558 / 0 AT3G47890 1631 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Potri.017G089250
[exp]
317 / 2e-87 AT3G47890 317 / 2e-87 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Potri.018G107500
[exp]
62 / 2e-09 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1)
Potri.006G185200
[exp]
57 / 1e-07 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042186
[exp]
1860 / 0 AT3G47890 1654 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Lus10008630
[exp]
1566 / 0 AT3G47890 1408 / 0.0 Ubiquitin carboxyl-terminal hydrolase-related protein (.1)
Lus10035825
[exp]
54 / 9e-07 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1)
Lus10036607
[exp]
52 / 5e-06 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1)
Lus10032623
[exp]
48 / 7e-05 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1)
Lus10043127
[exp]
45 / 0.0004 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1)
Lus10043126
[exp]
45 / 0.0007 AT5G46740 367 / 6e-116 ubiquitin-specific protease 21 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF00443 UCH Ubiquitin carboxyl-terminal hydrolase
CL0125 PF04780 DUF629 Protein of unknown function (DUF629)
CL0125 PF04781 DUF627 Protein of unknown function (DUF627)
Representative CDS sequence
>Potri.015G066500.1 pacid=42775351 polypeptide=Potri.015G066500.1.p locus=Potri.015G066500 ID=Potri.015G066500.1.v4.1 annot-version=v4.1
ATGGGGAATAGAAAACGCCCACCAAACTCTCTCACCAAACACCCTCCCTCGCCGTCGCCCGCGGCGGCGTCGGAAGAACCCGACCACCCGAATTCGGTTA
CTCCAGATTCGGACGGTTCAACGATCAAGCAAGAGTGCGGCCGCGCCTTGAATGCGCTGCGTCGCGGAAACCACACGAAAGCCCTACGTATCATGAAGGA
CTCGTGTGCTAAACACGGCGGCGACGCCTTAATCCACCGTGTTCACGGTACGGTGTGTGTTAAAGTTTCTTCGATAATCGATGACCCTAACAGTAAGCAG
CGGCACATAAAGAACGCAATTGAAGCTGCTCGTAGAGCGGCGGAATTGTCTCCGAATTCAATCGAATTCGCTCATTTCTACGCGAATTTGCTCTACGAGG
CGGCGAGTGATGGGAAAGAGTATGAAGAGGTAATGAAAGAGTGTGACCGTGCTTTGAAAATTGAGAATCCAATTGATCCTGCGAAGGAGAGTTTGCAGGA
GGAGAGTCAGCAGAAGATAGCTACAGCGGAAGGGAGGATCGCTCATGTGCAAGGTGAGTTGAAAAACTTGCAACATAAGTCCAACATTGCTTCGATCTCT
ACTTGGATGAAGAATTTGGGGACTGGTGAAGAGATTAGGTTAATACCTATAAGAAGAGCTACTGAAGATCCAATGGAAGTTAGGTTGGTGCAAACCAGGC
GGCCGAATGAGATTAAGAAAGCTACTAAGACGCAGGAAGAGAGGAGGAAAGAGATTGAAGTCAGGGTTGCTGCTGCCAGGTTGTTGCAGCAGCAGAAGTC
GGAGATGGGTTTGGGACAGAGTGAGGGAGAGAGGAGTGATCAAGGAGTGGCGGTAACGCCAGGGAGTGATAGGAGAGGAGAGAGGAGGAAATGTGGGAGT
AATGCGAGGAAGAATGGGACTAACACTGAGAGAAAGGACTGGGTTCGGTCCTATTGGAATTCGATGACCTTGGAAATGAAGAGGGAGTTGTTGAAAATTA
AGGTCAGTGATTTGAAGGGTTATTTTTGGTCATCCAAGGATGGATTGGCCAGTGACGTTTTGAATGAGTTGTTGGCTTACGGCTTGGAGAATAAGAGCTG
GAGGTTTTGGGTGTGTTGTCGATGCAATGAAAAGTTTGTGGACGCAGATAGTCATTTGCATCATGTTGTGCAAGAGCACATGGGGAGTCTTATGCCCAAG
ATGCAGGAAGTTTTACCTCAGAGTGCAGACAATGAGTGGATTGAGATGATTCTTAATAGCTCCTGGAAACCATTAGACATTTCCTCTGCGGTTAAGATGC
CTTGGAATCAAGGGAAATGTCATAATGGAGAGCTTGGTGAGGATTTTTGCTCAGAGCACCATAATGAGGACAGTGATGATTTTTTCAAAGATGCACGGGA
TTCTTCTCCAGAGAAGGAAAATTTGAGGGATGGTTATAACAGTTGTCCTGTGAGCAGTAGCAACTCTGACAAAGTTTACAATATTGAAGGTAAAGAATTT
GATGGGAACCAGTCGTCTATTGCATACACTATTGATAGCTGGTCAATATCAGAGGATTCTGAGCGAGCGAAGCTCCTCGAAAAAATTCATGATGTATTTC
AGGCACTTATTGGACATAAATATCTTGCTGCAAGCCATCTTAATAAGGTGATACAATTAACAATGGATGAACTACAGAATCTTGCTTCTGGTTCTCGGCT
TCTGAACCGTGGTGTGGGCCAGACACCCAATTGCATTTGCTTTCTGGGAGCATCCCAACTCAAAAAGATCCTTAAATTCTTACAGGAAATATCTCATTAC
TGTGGTTTGGGCAGGTCTCCCGAGAAAAGTATTGTTGTAGATGGCTCAAATTCTGGTGCTAAAGGTCCTGAAATTAAAGAGGAGATTGTTCTAAATGGTG
ATGAGCCTTGTCTCTGCTTGGATGAACGTTTATTGTCATTGGAATATGCTCCTAGCACATGTCCTGACAATGATGCCACCACAGCAACTTCGACTATTGC
TGCCTATGGAAATGGGGTTCAACCTGACGCTGATGCTTTGCTATCATGGATATTTGCAGGCCTTTCTAGTGGAGAGCAATTACAATCATGGATCCGTACA
AAAGAAGAGAAAATGCATCAAGGTATGGAAATTCTCCAGACTCTTGAGAAAGAGTTTTACCATCTGCAGAGCCTTTGTGAGAGGAAATGTGAACATTTAG
GTTATGAGCAAGCGTTGCAGGCTGTGGAGGATCTCTGTCTCGAAGAAGGTAAGAAGAGGGAGACTGACATGCTTGTTGAACATAGAAGCTATGATTCTGT
TCTTAGGCAGCGGAGAGAGCAGCTTGTTGAGAATGAGCATGATGCGCTGTTCATTAGCAGTAGATTTGAGTTAGATGCTATATTAAATGTGTTAAAAGAA
GCAGATACTCTGAATGCCAATCAATTCGGGTATGAGGATACTTATGGTGGTATAACTTCTCAGTTTTGTGACTTGGAATCTGGTGAAGATGGTAATTGGA
GAACCAAGGACCACATGCATCAAGTAGAAACTTGCATAGAAATTGCTATCCAGCGACAGAAAGAACACTTGTCAATAGAGCTCAGCAAAATTGATGCCCA
AATCATGCGGAATGTCTCTGGAATGCAGCAGTTGGAACTCAAGCTCGAGTCAGTTTCTGCCCTTGATTATCGATCAATCTTGCTACCCTTAGTGAAGTCC
TACATGAGGGCACACTTGGAGGATCTAGCCGAGAAGGATGCCACAGAGAAGTCTGATGCTGCAAGAGAAGCATTTTTGGCGGAGCTTGCCCTTGATTCTA
AGAAGGGTACCCAAGGACGTAGTGATAATTCAAGAAATACATTAGAGAAGGGGAAGGATAAGAGAAAGAACAAAGAGTACAAGAAAACCAAGGACTCAAA
GGTTGTTGCTGCTAGCGAGCAGCAATTGCTTCAAGATGCGACTAATGGGAGGGGTTCCTTTCCAGATGCATCTGATGGCAACTATCCAGATTCTCAGAGT
CATCTTTCTGTAAGCGATGATGATTTGAAACAACAGGAAGAGGAATTTAGATGGAAAATTGAGATTGAAGAGGAGGAAAGAATGCTCGAAGAATCTTTAG
AGTATCAAAGACGAATAGAGAATGAAGCCAAACAGAAGCATCTTGCTGAGCAACAGCACAAGAAATCTAATCGAACTTTTCCAGAGAAGTTGTCTGGGGG
ACTACACGATTATTGCTTTGATCCTGCTGCTGCTGATTCCCGTGAGCCATTGGAGCAGTTGACGCAGAAGAGGGGGTTGCCCAACAATTTAGAAGGCATA
CCCATGACAACAGCCAGTGAGCTATCTACTGGAGGAAGTGTGGAGGGTGGTCCTTCTGATCGACGGCCAGGAAGGAGAAGTAGGCGGCAGAAGAGTTCCT
CTCGATCTTCTGATGGAAAAAATCAACCCATGTTATCTGAAACAGAAAATACTGAAATCGGAAGCATTACTTCAAATTTGGGAGACAGTGCAACTAAGAC
ACTGAGACAGTTAAAAGTAGAGGAGGAGGATGAGGAAAGGTTTCAAGCTGACCTTGAAAAAGCCATGCGCCAAAGCCTTGACACATTTCAAGCAAATCAG
AAGATACCAATGATGTCAAGTTTGAAGCAAACAATTTCTTCTGAACTTGGTAATTCTGGTACTTCACCATATGAAGTTGCAACTGTAAATGTGGATGGAA
CTGATGTATTTGGCACTGGCTTGAAGAATGATATTGGTGATTACAATTGCTTTCTGAATGTTATCATACAGTCCTTGTGGCATTTAAGACGGTTTCGAGA
TGAGTTCTTGAGTAGATCACGATCAGAGCATGTTCATGTGGGAGATCCATGTGCTGTTTGTGCCTTGTATGATATTCTTACTGCTATGAGCATTGTATCC
ATGGATACACGAAGAGAAGCAGTTGCTCCAACATCACTGAGGATAGCTTTGAGCAACTTGTATCCTAATAGTAATTTCTTCCAGGAGGGACAGATGAATG
ACGCATCTGAAGTTTTGGCTGTGATATTTGACTGCCTTCATCGAGCATTTACCTCTGGTTTGCATGGTTCTGATTCTGAGGCAGTGGAACACAGTGGCAT
GGAGTCTTGGGAATGTACAAAAAAGAATGCTTGTATAGTGCACTCTCTTTTTGGAATGGACATTTCAGAACAAATGAATTGCCAGAGTTGTGGTGTGGAG
TCTAGACACCTGAAGTACAGTGCTTTCTTTCATAATATAAATGCCAGTGCCCTCCGAACAATGAAGGTCATGCGTGCTGAAAGCTCTTTTGATGAGCTTT
TAAATCTTGTCGAAATGAATCACCAGTTAGCTTGTGATACTGAGGCTGGTGGTTGTGGGAAGCCCAATTACACCCATCATATTCTGTCAACTCCACCACA
TGTTTTTACAACAGTTCTGGGCTGGCAGAAAACCTGTGAAAGCATTGATGATATAACAGCAACATTGACAGCTCTAAATACTGAGATAGATATCAGTGTT
TTTTATCGCGGTCTGGATCCAAAGAACATACGTAGCTTGGTTTCAGTGGTGTGCTACTATGGGCAACATTATCACTGCTTTGCCTATAGTCAAGATCTTG
ATCAGTGGATTATGTATGATGACAAGACTATTAAGGTAATTGGTAGCTGGACTGATGTTCTTGCCATGTGTGAAAAAGGACACTTGCAACCTCAGGTTCT
ATTCTTTGAAGCTGGAAACTAG
AA sequence
>Potri.015G066500.1 pacid=42775351 polypeptide=Potri.015G066500.1.p locus=Potri.015G066500 ID=Potri.015G066500.1.v4.1 annot-version=v4.1
MGNRKRPPNSLTKHPPSPSPAAASEEPDHPNSVTPDSDGSTIKQECGRALNALRRGNHTKALRIMKDSCAKHGGDALIHRVHGTVCVKVSSIIDDPNSKQ
RHIKNAIEAARRAAELSPNSIEFAHFYANLLYEAASDGKEYEEVMKECDRALKIENPIDPAKESLQEESQQKIATAEGRIAHVQGELKNLQHKSNIASIS
TWMKNLGTGEEIRLIPIRRATEDPMEVRLVQTRRPNEIKKATKTQEERRKEIEVRVAAARLLQQQKSEMGLGQSEGERSDQGVAVTPGSDRRGERRKCGS
NARKNGTNTERKDWVRSYWNSMTLEMKRELLKIKVSDLKGYFWSSKDGLASDVLNELLAYGLENKSWRFWVCCRCNEKFVDADSHLHHVVQEHMGSLMPK
MQEVLPQSADNEWIEMILNSSWKPLDISSAVKMPWNQGKCHNGELGEDFCSEHHNEDSDDFFKDARDSSPEKENLRDGYNSCPVSSSNSDKVYNIEGKEF
DGNQSSIAYTIDSWSISEDSERAKLLEKIHDVFQALIGHKYLAASHLNKVIQLTMDELQNLASGSRLLNRGVGQTPNCICFLGASQLKKILKFLQEISHY
CGLGRSPEKSIVVDGSNSGAKGPEIKEEIVLNGDEPCLCLDERLLSLEYAPSTCPDNDATTATSTIAAYGNGVQPDADALLSWIFAGLSSGEQLQSWIRT
KEEKMHQGMEILQTLEKEFYHLQSLCERKCEHLGYEQALQAVEDLCLEEGKKRETDMLVEHRSYDSVLRQRREQLVENEHDALFISSRFELDAILNVLKE
ADTLNANQFGYEDTYGGITSQFCDLESGEDGNWRTKDHMHQVETCIEIAIQRQKEHLSIELSKIDAQIMRNVSGMQQLELKLESVSALDYRSILLPLVKS
YMRAHLEDLAEKDATEKSDAAREAFLAELALDSKKGTQGRSDNSRNTLEKGKDKRKNKEYKKTKDSKVVAASEQQLLQDATNGRGSFPDASDGNYPDSQS
HLSVSDDDLKQQEEEFRWKIEIEEEERMLEESLEYQRRIENEAKQKHLAEQQHKKSNRTFPEKLSGGLHDYCFDPAAADSREPLEQLTQKRGLPNNLEGI
PMTTASELSTGGSVEGGPSDRRPGRRSRRQKSSSRSSDGKNQPMLSETENTEIGSITSNLGDSATKTLRQLKVEEEDEERFQADLEKAMRQSLDTFQANQ
KIPMMSSLKQTISSELGNSGTSPYEVATVNVDGTDVFGTGLKNDIGDYNCFLNVIIQSLWHLRRFRDEFLSRSRSEHVHVGDPCAVCALYDILTAMSIVS
MDTRREAVAPTSLRIALSNLYPNSNFFQEGQMNDASEVLAVIFDCLHRAFTSGLHGSDSEAVEHSGMESWECTKKNACIVHSLFGMDISEQMNCQSCGVE
SRHLKYSAFFHNINASALRTMKVMRAESSFDELLNLVEMNHQLACDTEAGGCGKPNYTHHILSTPPHVFTTVLGWQKTCESIDDITATLTALNTEIDISV
FYRGLDPKNIRSLVSVVCYYGQHYHCFAYSQDLDQWIMYDDKTIKVIGSWTDVLAMCEKGHLQPQVLFFEAGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G47890 Ubiquitin carboxyl-terminal hy... Potri.015G066500
[exp]
0 1
AT5G13530 KEG KEEP ON GOING, protein kinases... Potri.001G029600
[exp]
1.00 0.8899
AT5G64070 PI-4KBETA1, PI4... phosphatidylinositol 4-OH kina... Potri.005G059000
[exp]
1.73 0.8355
AT1G22310 ATMBD8, MBD8 methyl-CPG-binding domain 8 (.... Potri.002G097700
[exp]
2.00 0.8426
AT3G15470 Transducin/WD40 repeat-like su... Potri.011G122500
[exp]
6.70 0.7801
AT4G00800 SETH5 transducin family protein / WD... Potri.014G105601
[exp]
7.00 0.8010
AT4G12780 Chaperone DnaJ-domain superfam... Potri.014G197600
[exp]
10.19 0.7835
AT1G21580 Zinc finger C-x8-C-x5-C-x3-H t... Potri.002G077700
[exp]
10.48 0.8066
AT1G28420 HD HB-1 homeobox-1 (.1) Potri.004G048675
[exp]
10.58 0.8010
AT3G50370 unknown protein Potri.007G043300
[exp]
12.00 0.8093
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.003G083800
[exp]
14.14 0.7597

Potri.015G066500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.