Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74770 1199 / 0 zinc ion binding (.1) AT1G18910 1196 / 0 zinc ion binding;zinc ion binding (.1) AT3G18290 416 / 1e-124 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) AT3G62970 184 / 1e-51 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G22920 172 / 1e-47 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G25560 170 / 9e-47 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G18650 168 / 2e-46 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT2G40830 45 / 0.0003 RHC1A RING-H2 finger C1A (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122200 [exp] 440 / 2e-133 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 436 / 7e-132 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.012G055100 [exp] 435 / 1e-131 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G205400 [exp] 177 / 1e-49 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 165 / 2e-45 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G005700 [exp] 165 / 6e-45 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G245400 [exp] 163 / 2e-44 AT5G25560 475 / 7e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) Potri.006G121801 [exp] 150 / 3e-40 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.012G126700 [exp] 44 / 0.0007 AT1G68180 138 / 4e-39 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008628 [exp] 1273 / 0 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10042189 [exp] 813 / 0 AT1G18910 583 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10005111 [exp] 707 / 0 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 669 / 0 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10034346 [exp] 626 / 0 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042188 [exp] 244 / 4e-74 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008627 [exp] 239 / 3e-67 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10012811 [exp] 173 / 8e-48 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10033969 [exp] 154 / 1e-41 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10036664 [exp] 91 / 5e-22 AT3G18290 81 / 5e-20 embryo defective 2454, BRUTUS, zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05495 [poplar] [flax] zf-CHY CHY zinc finger
Representative CDS sequence Show only first row Show all	>Potri.015G066600.7 pacid=42775613 polypeptide=Potri.015G066600.7.p locus=Potri.015G066600 ID=Potri.015G066600.7.v4.1 annot-version=v4.1 ATGGACAGCTCCGGCGTCGGCGATTCTCCGAAATTACCGCCGGATAAGGAGAGAGATGCGGAGTCGCCATGGCCGCCGGCCGTGGTGGAGGCGGAGTGTT TCTCCAATGTCCGGCTCACAGACGCTCCCATACTTTTGCTTGTTCATTTCCACAAGGCACTGCGGGTGGAGATAGCTGACCTCCGCCGTCTGGCAGTCAC GGCCTCCCAGGCTGAGAGTGAGGCTCGTCGACCCGAGCTGGTAGTTGAGCTCCGTCGAAGATTCGATTTTCTCAAACTTGCGTATAAGTATCACACAGCT ACCGAAGATGAGGTTATCTTTCTTGCATTAGATACCTGCATTAAAAATGTTGCCCGTACATATTCGCTTGAGCATGAAAGCATCCATGACCTCTTTGGAA CTATTTTTCATTGGTTGGACCGATTGGAGGAAAATAAAAGTGGTTTGGAGCCCTTTCAGGAACTTGTAGTTTGCATCGGCACCATGCAGTCCTCCATTTG TCAGCATATGCTGAAAGAAGAAGAGCAGGTTTTTCCTTTGCTTATGCAGCAGTTCTCTCCCAGTGAACAGGCTTCACTTGTGTGGCAGTTCATTTGCAGC GTCCCTGTGATTGTGCTGGAGGATTTGTTGCCATGGATGTACTCCTTTTTTTGTCCAGAAAAACAAGTGGAGACTGTACAATGCATCAGACAAATGGTAC CCAAGGAAGAATCATTGCAAGAGGTGGTAATTTCTTGGCTCCTTAGAAATGATCAATCCTCTCCTAGGGCTTGCATCAGGATTAGACAAGGAAATCAGGA TGTACCCAACAAGATGAAAAGCATACTGCAATTGCAATCCTCTAAGAGGCTTTTGGAACAAAATCAACGAAGAAGGAAACATTGTGTCCAAACTGACGTT GGAAAAAGTCTGGTTGATTATCTACATCTTTGGCATGTTGCCATCCAGAAAGAGTGGAAAGAAATTTTGGAAGAGTTGTATCAGATTAGAACCTTAATCA GTGCTTTAACTGTAGATTCAATACTCTTCAGGCTGAAATTTCTCGCTGATGTGATTATCTTTTACAGCATTGCATTGAAGAGGTTCTTTTTCCCTGTGTT AAAGCTTGCGAACAAACACATGTTCCCTTCCTCCAGTGAGCAGTCCTCCATTGAAAATCACATAGAAAGCCTACACAAGTTGCTGTATTGTCAAAAGGGC TTACCATCATGCAAGTTTGTAGAGAAGCTTTGCCAAGAAATGAAATCTTTGGCGATGGATCTTACCAAACAATTTATTTTTTATGAAACCAAGGTATTTC CCTTTATTAGCAACAACTGCAGCCTTGAAACACAGCTGCAGATTTTGTACATGAGCCTTCATGTTATGCCACTGGGGTTACTGAAGTGTGCAATCACTTG GTTTGCAATTCACTTGTCTAAAAATGAATCCAGGTCCATTCTTGATAGCATGAATTTGGGGGAAGTTTTAGCCAACAAATCTTTCACTTCCCTTTTACTT GAGTGGTTCCACATCGGTTATTCAGGCAAAACCTCCATGGAAAATTTCTGCAAGGATTTGGAGAAAGTGTTCAGGAGCAGATATTCTATTCTACCTGAGC AAATCAAGGATGTTGTTTCCTTATCCTCACAGACTCAGACTTGTAAAGAATCTAAATCTAATAATATAGAACTGGTCTCTGCGAACAAGGGTAAAAATTT TCTTTCTTATGCTTTATCTCCTGGTTCCCACAGAGGTAAGGCATGTGACACATCCTACACTAGCGAAATAAATCTGCACATATTTTTTCCTGGAACATTA TGGGCATCGGATGCTTTTCTTAAATTGCCTGGTGGAGAGAGTTCTTCAGCTCCAACTATCAATCAACCAATACCGTTGGATTTCATTTTTTTCTTCCACA AGGCTCTCATGAAAGACTTGGAAGACCTTGTCTTTGGTTCGGTTAAACTAGCTGAAAACATCGGATTCCTAACAGAGTTCCACCGACACTTCCATCTCCT GCAGTTTTGGTATCAATTCCATAGTGATGCAGAGGATGAAATTGTCTTTCCAGCCCTGGAAGCTAAGGAAGAAGTTCGAAACATTAGCCACTCCTACACC ATTGACCACAAGCTTGAAGTTGAATACTTTAATGAAGTTAGCCACTTGTTAGATAAGATGTCTGAACTGCACATTTCCGCTTCTACTGATGATTTGGAAA AGCAGGATCAGATACTGGTGAAACACAATCGACTATGTATGAAACTCCATTATACATGCAAGTCAATGCATAAACTACTGTCTGACCATGTTCATCGAGA AGAAGTTGAACTTTGGCCCATGTTTAGAGAATGCTTCTCCATCCAAGAGCAAGAAAAGATCATTGGACGCATGCTAGGGAACATTAAAGCCAAAACGTTA CAAGATATGATACCCTGGCTTCTTGGTTCTTTAACACCTGAGGAACAACGTGAAATGATGTCTTTATGGCGTAATGTGACAAAAAATACAATGTTTGATG ACTGGTTGCGAGAATGGTGGGAAGGGTATGACATAGCTCATGTGGCAACGGAGTTGAATACTTCATGTACTCCTGATCCTCTGGATATTATTGCAAGATA TCTGCCTACAGAAGCCTTTGACAAACAAGGTGATGATCTCTATGATACCATTGAGTTTTCACAAAGAGACTTTTATAGTGTTAATATTGAGAAGCAAGAA GAAGAAAGTTTCGATGATAAAGTAAATATACATAATGGAGATCGAAACAATGATGAATGTTCAGAATGTAAAAAACTACTTTGCGAGGGTGACAAGGAGA GATTTAATGAAGTTTCTAATCTTACAAATAAGACTGATAAACCAGGCCAGCCTTTTCAATTAACTCTGAAGTCCAAGTATCACGAGCGGCTTCTGAAAAT GAGTCAGGACGATATGGAGGCAGCAATAAGAAGAGTATCTCGCGAATCATCCTTGGATCATCAGAAGAAATCATTCATAATCCAGAACCTGATAATGAGC CGTTGGATTGTTCATCAAAAGATATCTCATACAGAAGTAACCATCTCAAGTAATGGTGGGGAAGAAATTCCAGGTCAGCATCCATCTTATCGGGATTCTC CTGAACCAATCCTGGGTTGCAAACACTATAAAAGAAACTGTAAGCTTGTCATGCCTTGTTGTAACAAGATTTATACGTGCATACGTTGCCATGATGAGTT GGCTGATCATTCAACTGATAGGAGAGCTATTACAAAGATGATGTGCATGAAATGCTTGATTATACAGCCAATTGGAGAAACATGCTCAACTGTCTCCTGT AATAATTTATCGATGGGAAGATACTATTGCAGGATCTGCAAATTGCTTGATGATGAAAGGGAAATCTACCACTGCCCTTACTGTAATCTCTGCCGAGTGG GGAAGGGATTGGGCATCGATTACTTTCATTGCATGAATTGCAATGCCTGCATGGCAAGGTCTCTTTCCGTTCATGTATGCAGAGAAAAATGTCTGGAGGA CAACTGTCCAATTTGCCATGAATACATTTTCACATCAAGCACTCCTGTGAAAGCCCTTTATTGTGGTCATTTGATGCACTCAACATGTTTTCAGGAATAT ACTTGCACTCACTACACCTGCCCAATCTGTAGCAAGTCACTTGGAGACATGCAGATGTTGGATGCATTACTGGCTGAAGAAAAAATTCCAGATGAATACT CTGGACAAACTCAGTTTATACTCTGTAATGACTGTGAGAAGAAAGGAGCTGCTCGTTTCCATTGGCTATATCGCAAATGCCCATACTGTGGCTCATACAA CACCAGGCTTCTATGA
AA sequence Show only first row Show all	>Potri.015G066600.7 pacid=42775613 polypeptide=Potri.015G066600.7.p locus=Potri.015G066600 ID=Potri.015G066600.7.v4.1 annot-version=v4.1 MDSSGVGDSPKLPPDKERDAESPWPPAVVEAECFSNVRLTDAPILLLVHFHKALRVEIADLRRLAVTASQAESEARRPELVVELRRRFDFLKLAYKYHTA TEDEVIFLALDTCIKNVARTYSLEHESIHDLFGTIFHWLDRLEENKSGLEPFQELVVCIGTMQSSICQHMLKEEEQVFPLLMQQFSPSEQASLVWQFICS VPVIVLEDLLPWMYSFFCPEKQVETVQCIRQMVPKEESLQEVVISWLLRNDQSSPRACIRIRQGNQDVPNKMKSILQLQSSKRLLEQNQRRRKHCVQTDV GKSLVDYLHLWHVAIQKEWKEILEELYQIRTLISALTVDSILFRLKFLADVIIFYSIALKRFFFPVLKLANKHMFPSSSEQSSIENHIESLHKLLYCQKG LPSCKFVEKLCQEMKSLAMDLTKQFIFYETKVFPFISNNCSLETQLQILYMSLHVMPLGLLKCAITWFAIHLSKNESRSILDSMNLGEVLANKSFTSLLL EWFHIGYSGKTSMENFCKDLEKVFRSRYSILPEQIKDVVSLSSQTQTCKESKSNNIELVSANKGKNFLSYALSPGSHRGKACDTSYTSEINLHIFFPGTL WASDAFLKLPGGESSSAPTINQPIPLDFIFFFHKALMKDLEDLVFGSVKLAENIGFLTEFHRHFHLLQFWYQFHSDAEDEIVFPALEAKEEVRNISHSYT IDHKLEVEYFNEVSHLLDKMSELHISASTDDLEKQDQILVKHNRLCMKLHYTCKSMHKLLSDHVHREEVELWPMFRECFSIQEQEKIIGRMLGNIKAKTL QDMIPWLLGSLTPEEQREMMSLWRNVTKNTMFDDWLREWWEGYDIAHVATELNTSCTPDPLDIIARYLPTEAFDKQGDDLYDTIEFSQRDFYSVNIEKQE EESFDDKVNIHNGDRNNDECSECKKLLCEGDKERFNEVSNLTNKTDKPGQPFQLTLKSKYHERLLKMSQDDMEAAIRRVSRESSLDHQKKSFIIQNLIMS RWIVHQKISHTEVTISSNGGEEIPGQHPSYRDSPEPILGCKHYKRNCKLVMPCCNKIYTCIRCHDELADHSTDRRAITKMMCMKCLIIQPIGETCSTVSC NNLSMGRYYCRICKLLDDEREIYHCPYCNLCRVGKGLGIDYFHCMNCNACMARSLSVHVCREKCLEDNCPICHEYIFTSSTPVKALYCGHLMHSTCFQEY TCTHYTCPICSKSLGDMQMLDALLAEEKIPDEYSGQTQFILCNDCEKKGAARFHWLYRKCPYCGSYNTRLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74770			zinc ion binding (.1)		Potri.015G066600 [exp]	0	1
AT5G49960			unknown protein		Potri.019G097000 [exp]	4.00	0.7989
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.004G141700 [exp]	5.29	0.8317
AT4G10730			Protein kinase superfamily pro...		Potri.003G146000 [exp]	10.48	0.7603
AT5G47690			binding (.1.2.3)		Potri.016G005400 [exp]	11.31	0.8142
AT5G18525			protein serine/threonine kinas...		Potri.010G153300 [exp]	13.03	0.7709
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Potri.011G129700 [exp]	13.56	0.8225	GH3-5,DFL1.2
AT3G14470			NB-ARC domain-containing disea...		Potri.001G029300 [exp]	18.70	0.7953
AT4G10730			Protein kinase superfamily pro...		Potri.001G084700 [exp]	23.43	0.7276
AT3G08040		ATFRD3, MAN1, F...	MANGANESE ACCUMULATOR 1, FERRI...		Potri.001G266900 [exp]	29.03	0.8158	Pt-FRD3.2
AT1G67550		URE	urease (.1)		Potri.008G177900 [exp]	30.98	0.7644

Compare expression of checked genes

Potri.015G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.