Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74780 562 / 0 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34350 533 / 0 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G18940 527 / 0 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 511 / 1e-177 Major facilitator superfamily protein (.1) AT2G39210 291 / 4e-91 Major facilitator superfamily protein (.1) AT2G28120 286 / 2e-89 Major facilitator superfamily protein (.1) AT4G34950 246 / 3e-74 Major facilitator superfamily protein (.1) AT5G14120 246 / 4e-74 Major facilitator superfamily protein (.1) AT2G16660 245 / 5e-74 Major facilitator superfamily protein (.1) AT3G01930 243 / 5e-73 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G006400 [exp] 290 / 4e-91 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.008G032901 [exp] 288 / 6e-90 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 288 / 8e-90 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 286 / 1e-89 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 271 / 7e-84 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 263 / 7e-81 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 251 / 5e-76 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 249 / 2e-75 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.009G132700 [exp] 248 / 8e-75 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033115 [exp] 589 / 0 AT1G74780 619 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10042170 [exp] 495 / 4e-171 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10036663 [exp] 479 / 2e-164 AT1G74780 520 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10014640 [exp] 275 / 5e-85 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 272 / 1e-83 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 266 / 2e-81 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 243 / 1e-72 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 240 / 1e-71 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10034491 [exp] 228 / 1e-67 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 224 / 7e-66 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.015G067000.7 pacid=42776358 polypeptide=Potri.015G067000.7.p locus=Potri.015G067000 ID=Potri.015G067000.7.v4.1 annot-version=v4.1 ATGATGAAGATGGAGATTGTAAACACGAAATGGATAGCCACGGTTGCAAGCATATGGATTCAAAGCAGCGTTGGTGCGTCCTACACCTTCGGTATCTACT CTTCCATCCTCAAATCCTCTCAAGGCTACGACCAATCAACTCTTGACACCGTCTCCGTCTTCAAAGACATCGGTGCCAACGCAGGCATCCTCTCCGGTCT CCTTTACTCCGCTTTCACTCTGCAAAATAACCGAAGAAGATTAGGTGTGTTTGCCGGACCGTGTGTTGTTCTCTTGGCCGGTGCAATCCAGAGCTTCTTG GGGTATTTCGTGATGTGGGCATCCGTTGTTGGGTTGATTCGCCGCCTTCCGGTGGCGGTGATGTGTTTCTTCACGTGGATGGCTGCTCACGCGCAGACGT TTTCTAATACGACGAATGTGGTGAGTGGAGTTCACAATTTCGGCGATTATGGTGGGACCATCGTCGGGATCATGAAGGGCTTTCTTGGTTTGAGTGGAGC AATACTAATCCAATTCTACCAAACAGTGTGCAATGGTGATCCTGGCACTTTCCTTCTTCTTCTTGCACTGACGCCAACTCTAGTCTCTCTCTTGTTTATG AGTCTGGTACGAAACTATGACACAAATACAAAAGATGACAAGAAGTACTTGAATGCTTTCTCTGCAGTTTCTCTGATTATTGCAGCTTATCTCACAATCA TCATAATTTTGGAAAACATCAGTAGTCTGTCATCATTGGCGCGCATAATTACGTTCACAGTCTTGCTGCTTCTAGTTGCCTCACCTCTTGGAATTGCAGT CAGAGCCCATAGAGAGGACTCTGATAGGTATGCACAAGCGTTACTGGAACAGAGGGGTAGCAAACAGAACCCAGTGATATCTTCTGAGATCTGTACAGCA GAGGATTCTATAGAATATCATGAACTTCCTAGTGAAGAAGGTCAAGCAAAGGCTGCTTCTGACAACGAAAGGCTGTCAGATGAAGGAAACATGAATCTCT TGCAAGCCTTATGTAGCGTAAACTTCTGGTTGTTATTTATCGCTATGTTTTGTGGCTTAGGTTCTGGACTTGCTATGATAAACAACATCAGTCAAATAGG AGAATCTCTGGGTTACACGGCCACTGAAAGAAATTCTTTGGTTTCATTGCTGAGCATATGGAACTTTCTTGGCCGTTTTGGAGCTGGCTTTGTGTCGGAT ATTTTCTTGCACAGAGGTGGTTGGGCAAGACCACTGTTTGTCGCTGTTACTCTAGCAATCATGACCATTGGCCATATAATTGTTGCTGCTGGTTTTTCCA AAAACTTGTACTTGGGTTCGGTACTAGTTGGTGTTGCTTACGGTTCACAGTGGTCATTGATGCCTACCATCACTTCTGAGATATTTGGGGTGGGGCACAT GGGGACTATATTCAACACCATTGCCATAGCAAGTCCCGTTGGATCTTATACATTCTCTGTAAGAGTCATCGGGTTCATTTACGATAAAGTAGGAAGCGGT GAAAATAATACATGCTTCGGCAGTCGATGCTTTATGTTATCTTTTATGATCATGGCATCTGTTGCTTTCTTTGGAGTTCTTGTTGCTCTCCTATTGTTCT TTCGGACCAGGAGGTTCTATAAGTCGGTCGTGTTCAGGCGTTTGCAAAATTTGTAG
AA sequence Show only first row Show all	>Potri.015G067000.7 pacid=42776358 polypeptide=Potri.015G067000.7.p locus=Potri.015G067000 ID=Potri.015G067000.7.v4.1 annot-version=v4.1 MMKMEIVNTKWIATVASIWIQSSVGASYTFGIYSSILKSSQGYDQSTLDTVSVFKDIGANAGILSGLLYSAFTLQNNRRRLGVFAGPCVVLLAGAIQSFL GYFVMWASVVGLIRRLPVAVMCFFTWMAAHAQTFSNTTNVVSGVHNFGDYGGTIVGIMKGFLGLSGAILIQFYQTVCNGDPGTFLLLLALTPTLVSLLFM SLVRNYDTNTKDDKKYLNAFSAVSLIIAAYLTIIIILENISSLSSLARIITFTVLLLLVASPLGIAVRAHREDSDRYAQALLEQRGSKQNPVISSEICTA EDSIEYHELPSEEGQAKAASDNERLSDEGNMNLLQALCSVNFWLLFIAMFCGLGSGLAMINNISQIGESLGYTATERNSLVSLLSIWNFLGRFGAGFVSD IFLHRGGWARPLFVAVTLAIMTIGHIIVAAGFSKNLYLGSVLVGVAYGSQWSLMPTITSEIFGVGHMGTIFNTIAIASPVGSYTFSVRVIGFIYDKVGSG ENNTCFGSRCFMLSFMIMASVAFFGVLVALLLFFRTRRFYKSVVFRRLQNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74780			Nodulin-like / Major Facilitat...		Potri.015G067000 [exp]	0	1
AT1G74320			Protein kinase superfamily pro...		Potri.001G032000 [exp]	1.00	0.8201
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.003G043500 [exp]	4.12	0.7741
AT3G60190		ADL1E, ADL4, AD...	ENHANCED DISEASE RESISTANCE 3,...		Potri.002G135100 [exp]	18.73	0.7663
AT3G60070			Major facilitator superfamily ...		Potri.001G232100 [exp]	25.57	0.8008
AT5G27320		ATGID1C, GID1C	GA INSENSITIVE DWARF1C, alpha/...		Potri.013G028700 [exp]	32.71	0.7208
AT3G45600		TET3	tetraspanin3 (.1)		Potri.009G015100 [exp]	36.33	0.7389
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Potri.014G180100 [exp]	41.26	0.7764	MRP9.1
AT5G56350			Pyruvate kinase family protein...		Potri.013G060400 [exp]	41.47	0.7889
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.001G182000 [exp]	45.69	0.7737
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036100 [exp]	53.38	0.7643

Compare expression of checked genes

Potri.015G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.