Plant FIBer expression Database

Potri.015G067200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74790 916 / 0 catalytics (.1)
AT5G62630 797 / 0 HIPL2 hipl2 protein precursor (.1)
AT5G39970 779 / 0 catalytics (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G075800
[exp]
924 / 0 AT5G39970 837 / 0.0 catalytics (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036662
[exp]
962 / 0 AT1G74790 923 / 0.0 catalytics (.1)
Lus10033116
[exp]
925 / 0 AT1G74790 926 / 0.0 catalytics (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF07995 GSDH Glucose / Sorbosone dehydrogenase
Representative CDS sequence
>Potri.015G067200.1 pacid=42774820 polypeptide=Potri.015G067200.1.p locus=Potri.015G067200 ID=Potri.015G067200.1.v4.1 annot-version=v4.1
ATGGGAGCAGTTACTGCTATTTCCTTCCTGTTCTTGAACTTGCTGCTGCTGTTGCTTCCTGATCCTTCCTTTTCTCATCCCTTGTGTACTGATTCAAGGG
CACCCTTTACCTTGAACACCACTCTGAGTTTTTGTCCTTACAATGGGAGCAGCTGCTGCAATTCCACACATGATTTACAGTTACAGAAGCAATTTCAAGC
CATGAACATCTCTGATGCTGCCTGTGCCTCACTTTTGAAATCCATCCTTTGTGCTGGATGCGATCCATATTCAGCCGAGTTATTTACTGTAAGCTCTGTA
CCAAGGCCAGTTGCTGTTCTTTGCAATTCTACTGTTTCAGCAAATTCATCACAGTCTAGCCAAGCAGCAAATGACTTCTGCTCTAATGTATGGGATACAT
GTCAAAATGTAAATGTATTGAATTCCCCCTTCGCACCTTCCTTAAAAGGTCAAACTGGATCGCCAGCAAATTCCAGTTTCAGCAAATTGACTGTTGTCTG
GCAGTCAAAAGGCGACTTCTGCAATGCATTTGGTGGAGCATCTACAGATGAATCAGTATGTTATGCTGGTGAACCTGTTACACTCAATAACACTGAAACA
CCAAGTGACCCACATGGCTTGTGCCTAGAGAAAATTGGGAATGGATCTTACCTCAGTATGGTTGCGCATCCAGATGGATCTAACCGTGCTTTCTTCTCGA
GCCAACAGGGTAAGATTTGGTTGGCAACTATTCCTGAACAAGGATCAGGAGAGACATTAGGCTTTGACGAATCCAGTCCTTTTATTGATCTAACAGATGA
AGTGTATTTTAATACTGAATTTGGAATGATGGGGATGGCATTTCATCCAAACTTTGCACAAAATGGTCGGTTCTTTGCCTCGTTTAATTGTGATAAGGTG
AAGTGGCCAGGATGTACCGGCAGATGTTCATGCAACTCAGATGTCAATTGTGATCCTTCAAAACTAGCTCCTGACAATGGTGCCCAACCATGCCAATATC
AAACTGTTATTGCAGAGTATACAGCTAATGACACAGCAACCAAGGCTTCCTTGGGAACAACTGCGAAACCCTCGGAAGTAAGAAGGATATTTACAATGGG
CCTTCCATTTACATCTCATCATGGAGGACAGATTCTCTTTGGACCTAGTGATGGGTTTTTATACTTCATGATGGGAGATGGGGGTGGTGTAGGTGGTGAT
CCTCACAATTTTTCACAAAACAAGAAATCATTGCTTGGAAAAATCATGCGGCTTGATGTTGATAATATACCAAGTGCTGCAGAAATAGATAAACTTGATC
TATGGGGAAACTACTCCATCCCCAAAGATAATCCATATAGTGAAGATAGTGATTTGAAACCAGAAATATGGGCTTTAGGCGTAAGGAATCCCTGGCGCTG
TAGCTTTGATTCAGAAAGGCCTTCCTACTTCATGTGTGCAGATGTTGGCCAGGATACATATGAAGAGGTGAATGTCATCACTAAGGGCGGGAACTATGGT
TGGCGTGTTTATGAGGGACCCAATCCCTTTAGTCCTCAACAGTCACCAGGAGGAAATACATCTTCAGAGTCCATTAGCCCAATTTTCCCTGTTTTGGGAT
ACTATCACTCTGACATAAACAAGAATGAAGGGTCAGCATCCATCACGGGTGGTTATTTCTATCGCTCTCAGATAGATCCATGCATGTATGGAAGGTACTT
GTATGGAGATTTGTATGCTGGAGCCATGTGGGCAGGCACTGAAACACCAGAAAATAGTGGTAACTTTACCACCAGAAAAATCCCCTTCAGCTGTGGGAGG
GACTCTCCCATCCAGTGCACCTCTTTGCCAGGAAGTGCTCTGCCATCTTTGGGTTACATTTTCTCATTTGGGGAGGACAACCGCAAGGATAATTTTATCC
TAGCCAGCAGTGGTGTTTATAGAGTCGTTCGTCCAAGTCGCTGCAATTACACTTGCTCGAAGGAAAATGTCACCGCTGTTGGAAGCCCAAGTCCTACTTC
ACCCCCTTCAAATGCAGGCCAGTTACGTGGTTCATTTAGCAGGATTCTAGCCCTGTTCTCTTCTTTGCTGCTGCTTTTGTTGGGTGTTATCTAG
AA sequence
>Potri.015G067200.1 pacid=42774820 polypeptide=Potri.015G067200.1.p locus=Potri.015G067200 ID=Potri.015G067200.1.v4.1 annot-version=v4.1
MGAVTAISFLFLNLLLLLLPDPSFSHPLCTDSRAPFTLNTTLSFCPYNGSSCCNSTHDLQLQKQFQAMNISDAACASLLKSILCAGCDPYSAELFTVSSV
PRPVAVLCNSTVSANSSQSSQAANDFCSNVWDTCQNVNVLNSPFAPSLKGQTGSPANSSFSKLTVVWQSKGDFCNAFGGASTDESVCYAGEPVTLNNTET
PSDPHGLCLEKIGNGSYLSMVAHPDGSNRAFFSSQQGKIWLATIPEQGSGETLGFDESSPFIDLTDEVYFNTEFGMMGMAFHPNFAQNGRFFASFNCDKV
KWPGCTGRCSCNSDVNCDPSKLAPDNGAQPCQYQTVIAEYTANDTATKASLGTTAKPSEVRRIFTMGLPFTSHHGGQILFGPSDGFLYFMMGDGGGVGGD
PHNFSQNKKSLLGKIMRLDVDNIPSAAEIDKLDLWGNYSIPKDNPYSEDSDLKPEIWALGVRNPWRCSFDSERPSYFMCADVGQDTYEEVNVITKGGNYG
WRVYEGPNPFSPQQSPGGNTSSESISPIFPVLGYYHSDINKNEGSASITGGYFYRSQIDPCMYGRYLYGDLYAGAMWAGTETPENSGNFTTRKIPFSCGR
DSPIQCTSLPGSALPSLGYIFSFGEDNRKDNFILASSGVYRVVRPSRCNYTCSKENVTAVGSPSPTSPPSNAGQLRGSFSRILALFSSLLLLLLGVI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74790 catalytics (.1) Potri.015G067200
[exp]
0 1
AT2G17480 ATMLO8, MLO8 MILDEW RESISTANCE LOCUS O 8, S... Potri.007G064300
[exp]
1.00 0.9363 Pt-MLO8.2
AT1G22360 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 ... Potri.016G021000
[exp]
2.00 0.9199
AT1G22380 ATUGT85A3 UDP-glucosyl transferase 85A3 ... Potri.016G020500
[exp]
3.00 0.9049
AT1G55850 ATCSLE1 cellulose synthase like E1 (.1... Potri.001G369100
[exp]
3.46 0.8960 ATCSLE1.1
AT1G22540 Major facilitator superfamily ... Potri.013G106500
[exp]
3.74 0.8676
AT2G22590 UDP-Glycosyltransferase superf... Potri.012G034100
[exp]
5.00 0.8928
AT3G02720 Class I glutamine amidotransfe... Potri.017G143940
[exp]
5.65 0.8505
AT3G59850 Pectin lyase-like superfamily ... Potri.008G010700
[exp]
5.83 0.8488
AT5G53970 TAT7 tyrosine aminotransferase 7, T... Potri.017G014000
[exp]
8.00 0.8773
AT2G16770 bZIP bZIP23 Basic-leucine zipper (bZIP) tr... Potri.001G020200
[exp]
8.83 0.8572

Potri.015G067200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.