Plant FIBer expression Database

Potri.015G067300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18950 663 / 0 DDT domain superfamily (.1)
AT5G25580 216 / 4e-63 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G072200
[exp]
1138 / 0 AT1G18950 691 / 0.0 DDT domain superfamily (.1)
Potri.018G035700
[exp]
307 / 6e-96 AT5G25580 308 / 3e-100 unknown protein
Potri.006G244800
[exp]
290 / 1e-89 AT5G25580 297 / 3e-96 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042167
[exp]
754 / 0 AT1G18950 697 / 0.0 DDT domain superfamily (.1)
Lus10004259
[exp]
739 / 0 AT1G18950 695 / 0.0 DDT domain superfamily (.1)
PFAM info
Representative CDS sequence
>Potri.015G067300.4 pacid=42775387 polypeptide=Potri.015G067300.4.p locus=Potri.015G067300 ID=Potri.015G067300.4.v4.1 annot-version=v4.1
ATGTCTCGTGAACAACCCTCTCCTTCTCCGATCTCCCTAAACGAGGCCGACGCTCCTCTAAACGAGGCCGACGCTCGAACCCAAACGCCGCCAGTTAACA
GGAGCAACCGCCCGTCGCGAGCTTGTACAATACGGGCGGCGGCGAGGCTGCAGCAGCAGCAGCTGGCGGTAATCGAGCGGAAGCAGAAACCGAAGAAGCA
GGAACAGCAACAGCACTTAGATGAGTCTTCGGTGCAGCAGAATGAGCAATGCAGTGGTGGAAGTAGCAAGATCGTTACGCAGCTCGTGGCGCCTCCGGAG
CCGGCACAGTTGCCGAGGTGGAGCCTCCGGTCCATGTGGGAATTAGCTTCAGTACTCAATTTTTTAAATGTGAGTTTTTTCGTTTCTTGTTTTACTCCAT
TTCTTCGAGACTTCATCTTTATTCATTTCCTAAATTTAATGTTGCAGGTATTTAGGCATCTATTGAATATAACAGTTGAGTTTTCAGCTGAGGAGTTTGA
GACTGCTTTGATCACACCTAATGATACTTTGGGGGATATACATATGCCTTTGTTAAAGGCAATCCCTCCTATTACCAGAATGGCTCTCACACGAGATACC
TGGATTACTGTTTTGTGCAGAAAATTAAGAGACTGGTGGCACTGGGTTGCAGATGGGGAACTTCCCTTAGTTGCTTCACATGGGGTAGAGGTTGAAGTGT
ATAAAACACTTGATCCTGGGATCCGTGTGGTGATACTGAAAGCACTATGTGACATTCGTGTTGAGCAAGAAGATATTCGGAATTACATTGATAACTCCCT
CAAGCATGGCATTCAACTTTCATTATTTCGCAAGGAACGTTTTGGGGGTGATTCACAAGGAATAAATTACTGGTATGAAGATGATCCAATGATTGGTCAA
AGGTTATACCGGGAAATAAGAAAAACCGAGGTGAAGCTTAAAGCAAAGGCAAAGGGATCTCAGATCATCCCTAATGTGACATACCTGTGGGAGACAGTTG
CAACTAATTTCGAAGAATTTCAAGATGTTTCTGAGAAGCTCTATACTAGCAAAAATAGAACAGAGGCTTCGTTGGGGAAGAAATTAAAGAATGACATGCT
TCCTGAGATTGAGAAGGTTTACAAGAGGAAAGAGAGGCTGCTGAAAAAGCAACACAGGCAGGCTCTACTTCTTGATAATTTCTTGAGCATGGATGGACAT
GCACCAGGACGTTCTCTCCGTGATAGGAAGCCTGTCACTTATACTTTTGATGATTATGATCGGTCAATCAACGAGGCTATCAAAATAACAAAGCGTAAAC
CACCGTCTCCAGAACCTTTTCACAGAAGAGAAGGTTTTGCTAAACCTGAAGCTTCTACAAATGGTGAATTGAGTGGTCCTTCACACACATCGCAACATGG
CACTTTCAGTGCCGCATCTCCTGATTCTCTTGAATATGATGACATGGATGAAGACCATAAATCTGAAATGTTGGATCGGGGCAACAGGAGAAGACAGAGG
CCTCAACGGTATTCAGCAACAGAGTTTGTTGAGGCAGTTTCAGATAATGAGGCAGGCTTCGACAGTGATGATGATATAGTTGGAGAAGCTGTCTATGATG
ATGAATACTTGAGGAAACGTAAGCAGAAGAGGCTGTCTAGCAGCTCTGAAGGGGATGAAGAGTATCAGTGGGATGATGAAAATGGTGAGGAGGAAGAAGA
AGATGAAGAAGAGGATTCCTTAAGTATTAGTGAGGATAGTGAGGAGCCCCAAAAATTCAATAAATTTCCAGGCCGTACACGCAGGGAGACAAAATTACGG
TCAGTTGATGAAATCCAGTCAGGTCTAAGACGCAGCAGAAGGAGCACTCGGAACCAGATTAATTACCGACAATATGAGCTGTCCGAGTCAGAAACAGAGT
CAATGAAACGTGAGAAATCAAATGTATCAGATGAACACTCAGATGCAAGTGAGAATGCAGAGTATTCAGCTGGAAGTCAAAGTCAAGATTCTGATGGCAA
TGATGACAAACAAGGTATGAAAGTTGATCAGCCTGTAGAAGGTGACAAAGTGATAGAACAAAAGGAGCAAAATCAGCCACCTGAGCAATCAAATAGCCCA
GTCCAAGATGAAGTTGATGGTGTAAGGAAAAGACGTTTCCTCGATCTCAACGAACTAGCTCCAGGTTCTGGTTTTGATGATGGTCTGAACACAGTAATGA
AAGATGAAGATAGAAATGATTTTTGA
AA sequence
>Potri.015G067300.4 pacid=42775387 polypeptide=Potri.015G067300.4.p locus=Potri.015G067300 ID=Potri.015G067300.4.v4.1 annot-version=v4.1
MSREQPSPSPISLNEADAPLNEADARTQTPPVNRSNRPSRACTIRAAARLQQQQLAVIERKQKPKKQEQQQHLDESSVQQNEQCSGGSSKIVTQLVAPPE
PAQLPRWSLRSMWELASVLNFLNVSFFVSCFTPFLRDFIFIHFLNLMLQVFRHLLNITVEFSAEEFETALITPNDTLGDIHMPLLKAIPPITRMALTRDT
WITVLCRKLRDWWHWVADGELPLVASHGVEVEVYKTLDPGIRVVILKALCDIRVEQEDIRNYIDNSLKHGIQLSLFRKERFGGDSQGINYWYEDDPMIGQ
RLYREIRKTEVKLKAKAKGSQIIPNVTYLWETVATNFEEFQDVSEKLYTSKNRTEASLGKKLKNDMLPEIEKVYKRKERLLKKQHRQALLLDNFLSMDGH
APGRSLRDRKPVTYTFDDYDRSINEAIKITKRKPPSPEPFHRREGFAKPEASTNGELSGPSHTSQHGTFSAASPDSLEYDDMDEDHKSEMLDRGNRRRQR
PQRYSATEFVEAVSDNEAGFDSDDDIVGEAVYDDEYLRKRKQKRLSSSSEGDEEYQWDDENGEEEEEDEEEDSLSISEDSEEPQKFNKFPGRTRRETKLR
SVDEIQSGLRRSRRSTRNQINYRQYELSESETESMKREKSNVSDEHSDASENAEYSAGSQSQDSDGNDDKQGMKVDQPVEGDKVIEQKEQNQPPEQSNSP
VQDEVDGVRKRRFLDLNELAPGSGFDDGLNTVMKDEDRNDF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G18950 DDT domain superfamily (.1) Potri.015G067300
[exp]
0 1
Potri.009G112922
[exp]
5.65 0.8241
AT5G65560 Pentatricopeptide repeat (PPR)... Potri.006G124900
[exp]
6.08 0.8329
AT5G21160 LA RNA-binding protein (.1.2.3... Potri.001G220100
[exp]
6.63 0.7677
AT3G14750 unknown protein Potri.009G076700
[exp]
7.07 0.8012
AT5G16420 Pentatricopeptide repeat (PPR-... Potri.012G031600
[exp]
9.79 0.7834
AT5G13530 KEG KEEP ON GOING, protein kinases... Potri.001G029600
[exp]
12.48 0.7935
AT5G58040 FIP1[V], ATFIP1... homolog of yeast FIP1 [V], hom... Potri.018G110100
[exp]
12.96 0.8029
AT5G13010 EMB3011 embryo defective 3011, RNA hel... Potri.010G172500
[exp]
19.49 0.7800
AT2G29210 splicing factor PWI domain-con... Potri.009G036900
[exp]
26.38 0.7661
AT3G11040 AtENGase85B Endo-beta-N-acetyglucosaminida... Potri.008G073001
[exp]
27.92 0.7754

Potri.015G067300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.