Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62620 920 / 0 Galactosyltransferase family protein (.1.2) AT1G74800 879 / 0 Galactosyltransferase family protein (.1) AT1G27120 768 / 0 Galactosyltransferase family protein (.1) AT4G21060 665 / 0 Galactosyltransferase family protein (.1.2) AT1G26810 298 / 1e-91 GALT1 galactosyltransferase1 (.1) AT3G06440 296 / 2e-91 Galactosyltransferase family protein (.1.2) AT3G14960 68 / 5e-12 Galactosyltransferase family protein (.1) AT1G53290 67 / 1e-11 Galactosyltransferase family protein (.1) AT2G26100 62 / 4e-10 Galactosyltransferase family protein (.1) AT1G05170 47 / 3e-05 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G072400 [exp] 1107 / 0 AT5G62620 905 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G040400 [exp] 875 / 0 AT5G62620 858 / 0.0 Galactosyltransferase family protein (.1.2) Potri.016G013300 [exp] 696 / 0 AT4G21060 1000 / 0.0 Galactosyltransferase family protein (.1.2) Potri.006G011300 [exp] 695 / 0 AT4G21060 1005 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G151600 [exp] 332 / 2e-104 AT3G06440 702 / 0.0 Galactosyltransferase family protein (.1.2) Potri.010G168500 [exp] 303 / 9e-94 AT1G26810 857 / 0.0 galactosyltransferase1 (.1) Potri.008G086900 [exp] 292 / 1e-89 AT1G26810 829 / 0.0 galactosyltransferase1 (.1) Potri.001G392700 [exp] 71 / 9e-13 AT1G53290 452 / 3e-160 Galactosyltransferase family protein (.1) Potri.011G111700 [exp] 65 / 5e-11 AT1G53290 462 / 2e-164 Galactosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004256 [exp] 986 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10042164 [exp] 985 / 0 AT5G62620 961 / 0.0 Galactosyltransferase family protein (.1.2) Lus10037238 [exp] 867 / 0 AT5G62620 881 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036686 [exp] 736 / 0 AT5G62620 743 / 0.0 Galactosyltransferase family protein (.1.2) Lus10036154 [exp] 692 / 0 AT4G21060 963 / 0.0 Galactosyltransferase family protein (.1.2) Lus10032650 [exp] 317 / 9e-99 AT3G06440 659 / 0.0 Galactosyltransferase family protein (.1.2) Lus10030467 [exp] 311 / 3e-97 AT1G26810 780 / 0.0 galactosyltransferase1 (.1) Lus10012822 [exp] 310 / 3e-96 AT1G26810 828 / 0.0 galactosyltransferase1 (.1) Lus10037171 [exp] 298 / 1e-92 AT1G26810 764 / 0.0 galactosyltransferase1 (.1) Lus10036756 [exp] 299 / 3e-92 AT1G26810 831 / 0.0 galactosyltransferase1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00337 [poplar] [flax] Gal-bind_lectin Galactoside-binding lectin CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.015G067600.1 pacid=42776496 polypeptide=Potri.015G067600.1.p locus=Potri.015G067600 ID=Potri.015G067600.1.v4.1 annot-version=v4.1 ATGAAGAGGGGCAAATCTGATACGAAATTGGACACGTTTGTGTCATTAAGCAAGCAAAGATCCATTCAAATCGTGATTGCTGTAGCTGTTTTCTACATGC TTCTTGTCACCCTTGAAATCCCTTTTGTTTTCGACTCTCGTTTCACTTCTGAAACCACCACCGCCACCTCGACCACCCTTACTCGATTTTCTCACCTTCA AAGCGAACAAGATTTGCATGATAAAGATGCCCCATCTCGACCTATGAACTGGGTTTCCCATAATTCCGCCCAGCCTATGCGCTCTCAACTCGCTCGTTCC ACCACGAAACCCAACAAAATCTTGTCCACTTTGGGTTTTGAACCTAAAACGTTTGACCCCACTAAGAAAGATGGCTCGGTGAGCCTCCATAAAGCTGCGA AGACTGCTTGGGAAGACGGGTTGAAGATATGGGATGAAATGGAATCCGGAAAAATGCAAGTTTTGGAGGTTAAAAAGCCTGAGAATAAATCCGAACCGTG TCCCAATTCGGTTTCGCTCTCTGGGTCCGAGTTTTTGAAGCGAATGAGGATGGTGGAGTTGCCTTGTGGGCTCACTTTGGGGTCACATATAACGGTGGTG GGTAAGCCGAGAGCAGCACATGCCGAGAAGGACCCCAAGATTGCCTTGGTGAAGGAGGCAGGCGAGACGGTGATGGTTTCGCAGTTTATGATGGAATTGC TGGGATTGAAGACTGTGGAGGCTGAGGACCCTCCTAGGATTCTTCATTTTAATCCCAGGTTGAAAGGTGATTGGAGTTTGAAGCCTGTAATTGAGCAGAA TACTTGTTACAGAATGCAGTGGGGGACTGCTTTGCGCTGCGAGGGGTGGGGTTCTAAGGCCGATGAGGAGACTGTTGATGGTCAAGTTAAGTGCGAGAAG TGGGTCCGTGATGATGAAGATGATGATAAATCAGAGGAGTCCAAGGCAACTTGGTGGTTGAACCGGTTAATAGGTCGAACAAAAAAGGTGTCTTTTGACT GGCCATATCCTTTTGCAGAGGAGAAGCTGTTTGTCCTAACTCTAAGTGCTGGTTTGGAGGGTTATCACATTAATGTTGATGGGAGGCATGCCACTTCTTT TCCTTATCGAACTGGGTATACTCTTGAGGATGCAACGGGGCTAGCTGTTACTGGGGACATAGATGTTCACTCTGTATTTGCTGCTTCATTGCCCTCGAAT CACCCTAGCTTTTCTCCTCAAAGGCATCTAGAGATGTCTAGCAGGTGGAAAGCACCACCTCTTTCTGTGGGGTCAGTGGAACTTTTTATTGGTGTTCTTT CTGCAGGTAATCATTTTTCTGAGCGAATGGCTGTGAGGAAGTCTTGGATGCAGCATAGGCTTATTAAATCTTCAAATGTGGTAGCTCGTTTCTTTGTAGC ACTGCATGCTCGAAAAGAAGTGAATTTGGAGTTAAAGAAAGAGGCTGAATTTTTTGGTGATATTGTTATAGTGCCTTACATGGATAACTATGATCTTGTG GTGTTGAAAACTGTTGCCATCTGCGAATATGGGGTCCGCACAGTGCGTGCAAAATATATCATGAAGGGTGACGATGATACATTTGTGAGAGTGGATTCCA TTATTGATGAAGTAAATGAAATTCCTGCTGGTAGGAGCTTGTACATTGGAAACATAAATTACTACCATAAGCCCCTGCGATATGGTAAATGGGCAGTGAC ATATGAGGAATGGCCAGAAGAAGATTATCCACCCTATGCAAATGGGCCAGGCTACATTTTATCTTCTGACATCGGGCGCTTCATTGTTTCTGAGTTTGAG AGTCATAAATTAAGGTTGTTCAAGATGGAAGATGTGAGCATGGGAATGTGGGTAGAGCAGTTCAATAGCTCAAGACCTGTGGAGTATGTGCACAGCTTGA AGTTCTGCCAGTTTGGATGTATTGAAGGTTATTACACGGCTCATTACCAGTCCCCCAAGCAAATGATCTGCCTTTGGGAAAAATTACAAAAGCAGGGAAG GCCTCAGTGCTGCAACATGAGATGA
AA sequence Show only first row Show all	>Potri.015G067600.1 pacid=42776496 polypeptide=Potri.015G067600.1.p locus=Potri.015G067600 ID=Potri.015G067600.1.v4.1 annot-version=v4.1 MKRGKSDTKLDTFVSLSKQRSIQIVIAVAVFYMLLVTLEIPFVFDSRFTSETTTATSTTLTRFSHLQSEQDLHDKDAPSRPMNWVSHNSAQPMRSQLARS TTKPNKILSTLGFEPKTFDPTKKDGSVSLHKAAKTAWEDGLKIWDEMESGKMQVLEVKKPENKSEPCPNSVSLSGSEFLKRMRMVELPCGLTLGSHITVV GKPRAAHAEKDPKIALVKEAGETVMVSQFMMELLGLKTVEAEDPPRILHFNPRLKGDWSLKPVIEQNTCYRMQWGTALRCEGWGSKADEETVDGQVKCEK WVRDDEDDDKSEESKATWWLNRLIGRTKKVSFDWPYPFAEEKLFVLTLSAGLEGYHINVDGRHATSFPYRTGYTLEDATGLAVTGDIDVHSVFAASLPSN HPSFSPQRHLEMSSRWKAPPLSVGSVELFIGVLSAGNHFSERMAVRKSWMQHRLIKSSNVVARFFVALHARKEVNLELKKEAEFFGDIVIVPYMDNYDLV VLKTVAICEYGVRTVRAKYIMKGDDDTFVRVDSIIDEVNEIPAGRSLYIGNINYYHKPLRYGKWAVTYEEWPEEDYPPYANGPGYILSSDIGRFIVSEFE SHKLRLFKMEDVSMGMWVEQFNSSRPVEYVHSLKFCQFGCIEGYYTAHYQSPKQMICLWEKLQKQGRPQCCNMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62620			Galactosyltransferase family p...		Potri.015G067600 [exp]	0	1
AT3G21220		ATMAP2K_ALPHA, ...	ARABIDOPSIS THALIANA MITOGEN-A...		Potri.010G249300 [exp]	6.63	0.7378	MKK4.1
AT2G36950			Heavy metal transport/detoxifi...		Potri.006G124800 [exp]	18.97	0.7419
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Potri.008G144200 [exp]	21.72	0.7618
AT1G61140		EDA16	embryo sac development arrest ...		Potri.004G037700 [exp]	27.38	0.7503
AT4G15240			Protein of unknown function (D...		Potri.017G039500 [exp]	27.92	0.7455
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.002G039900 [exp]	36.67	0.7493	APG9.1
AT4G14950		KMS1	Killing Me Slowly 1, SNARE ass...		Potri.005G032200 [exp]	40.18	0.6638
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.009G160100 [exp]	43.68	0.7344
AT2G03140			alpha/beta-Hydrolases superfam...		Potri.006G136900 [exp]	47.85	0.7403
					Potri.004G044750 [exp]	52.30	0.7145

Compare expression of checked genes

Potri.015G067600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.