Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	VFPP2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10430 606 / 0 PP2A-2 protein phosphatase 2A-2 (.1) AT1G59830 601 / 0 PP2A-1 protein phosphatase 2A-2 (.1.2) AT1G69960 589 / 0 PP2A serine/threonine protein phosphatase 2A (.1) AT2G42500 537 / 0 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 536 / 0 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT4G26720 435 / 6e-155 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 434 / 2e-154 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT3G19980 375 / 4e-131 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT1G50370 372 / 6e-130 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G39840 290 / 1e-97 TOPP4 type one serine/threonine protein phosphatase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073300 [exp] 639 / 0 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 608 / 0 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1) Potri.008G191600 [exp] 608 / 0 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 541 / 0 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 540 / 0 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 537 / 0 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.006G196100 [exp] 534 / 0 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.011G092200 [exp] 431 / 2e-153 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 429 / 2e-152 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042160 [exp] 637 / 0 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10033122 [exp] 628 / 0 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10036657 [exp] 619 / 0 AT1G10430 598 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 614 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 614 / 0 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10004252 [exp] 548 / 0 AT1G69960 538 / 0.0 serine/threonine protein phosphatase 2A (.1) Lus10025174 [exp] 542 / 0 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10039185 [exp] 538 / 0 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016053 [exp] 535 / 0 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 525 / 0 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.015G068300.1 pacid=42776253 polypeptide=Potri.015G068300.1.p locus=Potri.015G068300 ID=Potri.015G068300.1.v4.1 annot-version=v4.1 ATGCCGTCTCACGTGGATCTGGACCGGCAGATCGAGCACTTGATGCAGTGCAAGCCACTAGCTGAAGCGGAAGTGAAAGCACTGTGTGAGCAAGCAAGAG CGGTCCTTGTGGAGGAATGGAACGTTCAGCCTGTCAAATGTCCAGTGACTGTCTGTGGTGATATTCACGGTCAATTCCATGATCTTGTCGAACTCTTTCG CATCGGTGGCAACGCTCCCGACACTAACTACCTCTTCATGGGCGACTACGTAGATCGAGGATATTACTCTGTGGAGACTGTCACTCTTTTAGTGGCACTG AAAGTTCGATATAGAGATAGGATCACAATTCTAAGAGGAAATCATGAGAGTCGTCAAATAACCCAAGTGTATGGATTTTATGATGAATGCTTGCGGAAAT ATGGAAATGCCAATGTCTGGAAATATTTCACCGACCTCTTTGATTACCTCCCACTTACGGCCCTAATTGAGAGTCAGATCTTCTGCTTGCATGGTGGTCT TTCCCCATCTTTGGACACATTGGATAATATTCGTTCCCTGGACCGTATACAGGAGGTACCTCATGAGGGTCCAATGTGTGATCTCCTTTGGTCTGATCCG GATGATCGTTGTGGATGGGGAATTTCTCCTCGTGGGGCTGGATACACCTTTGGACAGGATATCTCTCAACAGTTCAACCACACTAATGGGCTCACTCTCA TTTCTAGAGCTCACCAGCTTGTCATGGAAGGATACAATTGGTCCCAGGACAAGAATGTGGTTACAGTGTTCAGTGCGCCAAATTACTGCTATCGCTGCGG GAATATGGCTGCAATACTTGAGATTGGGGAGAATATGGAGCAGAATTTCCTTCAATTTGACCCAGCACCTCGTCAGATTGAACCTGATACCACACGCAGA ACTCCTGACTATTTTTTATAA
AA sequence Show only first row Show all	>Potri.015G068300.1 pacid=42776253 polypeptide=Potri.015G068300.1.p locus=Potri.015G068300 ID=Potri.015G068300.1.v4.1 annot-version=v4.1 MPSHVDLDRQIEHLMQCKPLAEAEVKALCEQARAVLVEEWNVQPVKCPVTVCGDIHGQFHDLVELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVAL KVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKYFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRSLDRIQEVPHEGPMCDLLWSDP DDRCGWGISPRGAGYTFGQDISQQFNHTNGLTLISRAHQLVMEGYNWSQDKNVVTVFSAPNYCYRCGNMAAILEIGENMEQNFLQFDPAPRQIEPDTTRR TPDYFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.015G068300 [exp]	0	1	VFPP2.2
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Potri.013G049100 [exp]	1.41	0.6876
AT3G55390			Uncharacterised protein family...		Potri.008G053500 [exp]	5.65	0.6049
AT5G28850			Calcium-binding EF-hand family...		Potri.013G047300 [exp]	7.07	0.6380
AT5G54920			unknown protein		Potri.011G138600 [exp]	7.34	0.6672
AT1G47490		ATRBP47C	RNA-binding protein 47C (.1.2)		Potri.014G034600 [exp]	14.00	0.6750
AT2G40290			Eukaryotic translation initiat...		Potri.010G184900 [exp]	26.30	0.6604
AT1G25260			Ribosomal protein L10 family p...		Potri.001G460100 [exp]	27.71	0.6245
AT2G42520			P-loop containing nucleoside t...		Potri.003G217800 [exp]	28.74	0.5863
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Potri.002G197600 [exp]	30.39	0.5436	ATFIP37.1
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Potri.009G037700 [exp]	41.02	0.5337	Pt-TOPP1.1

Compare expression of checked genes

Potri.015G068300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.