Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74830 338 / 3e-111 Protein of unknown function, DUF593 (.1) AT1G18990 335 / 4e-110 Protein of unknown function, DUF593 (.1) AT1G08800 92 / 1e-19 Protein of unknown function, DUF593 (.1.2) AT5G16720 91 / 2e-19 Protein of unknown function, DUF593 (.1) AT2G30690 88 / 2e-18 Protein of unknown function, DUF593 (.1) AT1G70750 85 / 3e-17 Protein of unknown function, DUF593 (.1) AT5G06560 66 / 2e-11 Protein of unknown function, DUF593 (.1) AT4G13630 61 / 7e-10 Protein of unknown function, DUF593 (.1.2) AT1G04890 59 / 4e-09 Protein of unknown function, DUF593 (.1) AT4G13160 56 / 1e-08 Protein of unknown function, DUF593 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073400 [exp] 668 / 0 AT1G74830 390 / 2e-129 Protein of unknown function, DUF593 (.1) Potri.013G043400 [exp] 100 / 3e-22 AT1G08800 227 / 2e-61 Protein of unknown function, DUF593 (.1.2) Potri.019G012200 [exp] 99 / 7e-22 AT1G08800 239 / 1e-65 Protein of unknown function, DUF593 (.1.2) Potri.005G220600 [exp] 98 / 2e-21 AT1G08800 159 / 1e-39 Protein of unknown function, DUF593 (.1.2) Potri.002G042500 [exp] 92 / 2e-19 AT2G30690 195 / 2e-52 Protein of unknown function, DUF593 (.1) Potri.019G007802 [exp] 92 / 2e-19 AT1G08800 221 / 3e-61 Protein of unknown function, DUF593 (.1.2) Potri.017G129200 [exp] 79 / 3e-15 AT5G16720 286 / 2e-84 Protein of unknown function, DUF593 (.1) Potri.008G132200 [exp] 79 / 3e-15 AT1G70750 288 / 1e-84 Protein of unknown function, DUF593 (.1) Potri.004G087600 [exp] 78 / 6e-15 AT5G16720 281 / 2e-82 Protein of unknown function, DUF593 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033123 [exp] 354 / 1e-116 AT1G74830 430 / 4e-145 Protein of unknown function, DUF593 (.1) Lus10036656 [exp] 353 / 3e-116 AT1G74830 434 / 1e-146 Protein of unknown function, DUF593 (.1) Lus10004050 [exp] 96 / 1e-20 AT5G16720 290 / 7e-87 Protein of unknown function, DUF593 (.1) Lus10024869 [exp] 92 / 2e-19 AT1G08800 191 / 4e-51 Protein of unknown function, DUF593 (.1.2) Lus10018782 [exp] 92 / 2e-19 AT1G08800 189 / 2e-50 Protein of unknown function, DUF593 (.1.2) Lus10006566 [exp] 92 / 3e-19 AT1G08800 246 / 5e-68 Protein of unknown function, DUF593 (.1.2) Lus10033854 [exp] 91 / 4e-19 AT2G30690 213 / 6e-59 Protein of unknown function, DUF593 (.1) Lus10014743 [exp] 91 / 4e-19 AT2G30690 204 / 3e-56 Protein of unknown function, DUF593 (.1) Lus10005527 [exp] 89 / 2e-18 AT1G08800 242 / 5e-67 Protein of unknown function, DUF593 (.1.2) Lus10002289 [exp] 88 / 3e-18 AT5G16720 293 / 6e-88 Protein of unknown function, DUF593 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04576 [poplar] [flax] Zein-binding Zein-binding
Representative CDS sequence Show only first row Show all	>Potri.015G068400.1 pacid=42775684 polypeptide=Potri.015G068400.1.p locus=Potri.015G068400 ID=Potri.015G068400.1.v4.1 annot-version=v4.1 ATGGCAAAGAGATCATTTAAATGTTTTGTGGAACAAGATCTGGGAAAGCTCCCACTCTTCTTGATCTATGCCGTGCTCGAATGGGTGTTAATTGCCGTGG TCTTTATTGATGGGTTACTTGCGTTTTTTGCCAACGAATTTACATTTTTTGCCAACGAATTTACAAAGTTCTTTGAGTTGAAAATCCCTTGTTTGCTCTG CACAAGGATTGATCTGGCTGTTGTTCGTAGAGATGCTGATCTTTATTACAACCAATCCATATGTGAAACTCACAAGAAGGAAGTTTCAAGTCTAGCTTAT TGTCGTGTCCACAAGAAGCTTTCGGATATAAGAAAAATGCGTGAGGGGTGTCTTCTTTCTTTTGCTACGAAGAAAGAATCTGATTGTGATACATATAAGT CTCCTGTTAGGGTTTTACATAAGAATATCGAGCTGTTTGTTGATGATGATCGTGACATTCATTTGAGGCTGCCTACTGGAGGAAAAGACAACATGGTGCC AGCTGAGAAGAGCAACCTCCACCAGGGTTCATGCTGTGGGAACCCATTGAAGGTAAAGGCCTACACGAAGGGAAAGATTGCAGGCACGCTCTCACAAGCT CCTACTCCTTCTCCCTGGGTACCATTGGTGAGTTTGAGAAATGAGGACCCTCGGAAGTTGGACTTATCTCAGGTGCGATACACAGAACTCAACTTCTCAG AAAATGACTCAGAGCTTCAAGATGATGAGGATGTCTCGAATGCAGCACATCTGGATAAGCAATTCACGGACGATGTGAAAGCTGCTATGGTGCCATTGTT GACAGAAGCTGAGAATACGAATGAAGATTGGACCCCTACATTTTCCAGAGGAAATAAGTTTCTTGGAATCCTACTAACAGATTCAGCCACCGCCAGTCCC AGGGCATTTACTAGGTTTCCGAGGAAATCATTCCTTGACGAAACTGAAGATGCTTCAGAGTTCACTGAAGGGACTTGTCTATCAAATGAGCTGGTAGATG ATGACTCAATTTTGCACCATTTGAAGAAACAGGTTCATCTGGATCGCAAGTTACTGATGGCTTTATACATGGAATTGGATGAAGAAAGAAGTGCTTCGGC CGTTGCAGCTAATAATGCAATGGCCATGATCACCTGGTTGCAGGCAGAGAGGGCAGCTGTTCAGATGGAGGCAATACAGTATCAAAGAATGATGGAGGAG CAGGCAGAGTATGACCAAGAGGCCCTGCAAGCAACAAGGGATATCCTTTCCAAGAGAGAGAAACAAATCAAGGGTTTAGAGTTTGAGCTCATGGCCTATA GAGAAAATTATGGAGCCCTTTTCGGACAAGGTTTTATGGGATCCGGAGATGAGATTGATGAGGATTGTCATGAGTTGAAACCACATTCTCATTCATCTTA G
AA sequence Show only first row Show all	>Potri.015G068400.1 pacid=42775684 polypeptide=Potri.015G068400.1.p locus=Potri.015G068400 ID=Potri.015G068400.1.v4.1 annot-version=v4.1 MAKRSFKCFVEQDLGKLPLFLIYAVLEWVLIAVVFIDGLLAFFANEFTFFANEFTKFFELKIPCLLCTRIDLAVVRRDADLYYNQSICETHKKEVSSLAY CRVHKKLSDIRKMREGCLLSFATKKESDCDTYKSPVRVLHKNIELFVDDDRDIHLRLPTGGKDNMVPAEKSNLHQGSCCGNPLKVKAYTKGKIAGTLSQA PTPSPWVPLVSLRNEDPRKLDLSQVRYTELNFSENDSELQDDEDVSNAAHLDKQFTDDVKAAMVPLLTEAENTNEDWTPTFSRGNKFLGILLTDSATASP RAFTRFPRKSFLDETEDASEFTEGTCLSNELVDDDSILHHLKKQVHLDRKLLMALYMELDEERSASAVAANNAMAMITWLQAERAAVQMEAIQYQRMMEE QAEYDQEALQATRDILSKREKQIKGLEFELMAYRENYGALFGQGFMGSGDEIDEDCHELKPHSHSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74830			Protein of unknown function, D...		Potri.015G068400 [exp]	0	1
AT3G59850			Pectin lyase-like superfamily ...		Potri.017G005900 [exp]	1.00	0.8545
					Potri.014G110850 [exp]	3.00	0.7471
AT1G43760			DNAse I-like superfamily prote...		Potri.004G128961 [exp]	6.92	0.6500
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Potri.004G122133 [exp]	10.39	0.6755
AT1G43760			DNAse I-like superfamily prote...		Potri.017G066550 [exp]	12.04	0.5491
					Potri.004G021400 [exp]	12.36	0.6487
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Potri.018G036200 [exp]	15.09	0.6259
					Potri.003G185666 [exp]	21.42	0.5664
AT1G43760			DNAse I-like superfamily prote...		Potri.004G128860 [exp]	26.45	0.5196
					Potri.007G018201 [exp]	30.33	0.4680

Compare expression of checked genes

Potri.015G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.