Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62600 1454 / 0 MOS14 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) AT1G12930 85 / 1e-16 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G073600 [exp] 1791 / 0 AT5G62600 1450 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Potri.014G141100 [exp] 134 / 6e-32 AT1G12930 1258 / 0.0 ARM repeat superfamily protein (.1) Potri.013G088600 [exp] 46 / 0.0001 AT5G17020 1924 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2) Potri.019G052100 [exp] 46 / 0.0001 AT5G17020 1919 / 0.0 HEAT-INTOLERANT 2, ARABIDOPSIS THALIANA EXPORTIN 1, exportin 1A (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042159 [exp] 1511 / 0 AT5G62600 1352 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10004250 [exp] 1451 / 0 AT5G62600 1296 / 0.0 modifier of snc1-1, 14, ARM repeat superfamily protein (.1) Lus10012590 [exp] 138 / 7e-33 AT1G12930 1148 / 0.0 ARM repeat superfamily protein (.1) Lus10041503 [exp] 125 / 5e-29 AT1G12930 558 / 0.0 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF08389 [poplar] [flax] Xpo1 Exportin 1-like protein
Representative CDS sequence Show only first row Show all	>Potri.015G068600.1 pacid=42775881 polypeptide=Potri.015G068600.1.p locus=Potri.015G068600 ID=Potri.015G068600.1.v4.1 annot-version=v4.1 ATGGAGCTTCAAAATTCAGTGAAAGAAGCTCTAAATGCGCTGTACCATCATCCAGACGATGTGTTTCGTATGGAAGCCGATCGATGGCTACAAAACTTTC AACGCACAATCGATGCCTGGCAGGTTGCTGATAATTTGCTTCACGATGCCACCAGCAATCTGGAAACCTTAATATTTTGTTCTCAAACTCTTAGAAGCAA GGTACAACGAGATTTTGAAGAACTGCCCTCTGAAGCCTTTCGACCATTGCGTAGTTCCTTAAATACCTTGTTAAAAAAATTTCACAGAGGCCCCCCTAAA GTGAGGACTCAGATTAGCATTGCTGTGGCTGCCTTGGCTGTACAAGTTCCTCCTGAGGATTGGGGGGATGGTGGTATTGTAAATTGGCTCAAGGATGAGA TGACTTCACATCCAGAATATATACCAGGATTTCTGGAGTTGCTTACAGTTTTACCAGAGGAAGTATTCAACTACAAGATAGCTGCTCGTCCGGAAAGACG CCGCCAATTCGAGAACGAGCTCACTTCTCAAATAGAGGTCGCTCTTAATATTTTGACAGCTTGCTTGAAAATAAGTGAGCTAAAGGAGCAGGTTCTTGAG GCATTTTCTTCTTGGATTCGACTAAGGCATGGGATCCCTGGGTCTGTGCTTGCTTGTCATCCATTGGTGTATACAGCTCTATCAAGTTTGAATTCTGAGA CCCTTTCAGAGGCAGTTGTAAATGTCATATCAGAATTGATACATTACACAACAGCTGGAAACTCTGGTGGCATTCCCGTGCAGATGCCTTTAATTCAAGT GATTGTGCCTCAAGTCATGAGTCTAAAGGAGCAACTCAGAGATTCTTCTAAGGATGAAGAAGATGTGAAGGCCATTGCTAGATTATTTGCAGACATGGGT GATTCGTATGTCGAGCTGATTGCAACTGGTTCTGATGAGTCAATGATTATTGTAAATGCATTATTAGAAGTTGCTTCACACCCAGAATATGATATTGCTT CAATGACATTCAATTTCTGGCACAATCTTCAACATATCTTGACTAAGAGGGATTCCTATACTTCATTTGGCAATGAAGTATCCATTGAAGTTGAGAGAAG TAGGAGGCTGCAAGTTTTTCACTCAGCCTATGAGTCCCTTGTGTCCCTGGTTAGCTTTCGAGTTAAATATCCTCAAGATTATCAAACCCTGTCAGTTGAA GATCTCAAGGAATTCAAACAGACAAGATATGCTGTCACGGATGTATTAATTGATGCAGCATCAGTTTTAGGCGGTGATGCAACTTTGAGAATTCTTTACG TGAAACTTTATGAGGCCCGAACCTGCTTGGGGAATGGACATAATCAATGGCATCCAGCTGAAGCTGCTCTGTTTTGCATCAGAGCTATATCAAATTATGT TTCAACAGTCGAAGCTGAAGTAATGCCCAAGATTATGTCTTTGCTTTTGGAACTTCCTCATGAGCCCCAATTGCTCCAGACAGTGTGCTTAACGATTGGG GCATATTCAAAATGGCTTGATGCGTCATCAGATGGATTTCCTCTATTGTCTTCAGTCATTAAAGTTCTGCTGAGTGGCATGAGTAAATCAGAAGATTCTG CAGCAGCTGCGGCAGTGGCATTCAGACACATCTGTGATGATTGCCGGAGAAAGCTTTGTGGATATTTTGATGAACTCTTTTCCATATACCACAGTGCTGT AATTGAGGGAGGTAGTTTTAAAGTTTCTGCTGAGGACTCTTTGCACATGGTTGAAGCCTTCAGCATGGTCATTACAGAACTTCCAGCTGACCAGGCTAAG CAGGCGTTGGAGAAATTATGCTTGCCAGTTGTTACTCCTCTACAGGAAATTATTAGTCACGGTCCAGAAGTATTGGAGAAGAAACCTGCTCGAGAGTTAA CAGTTCATATTGATCGACTAGCATACATCTTTAGGTATGTAAATCACCCAGAAGCTGTGGCAGATGCAATTCAAAGGCTTTGGCCAATTTTGAAAGCAAT CTTTGACATTCGTGCTTGGGATATGCAGACAATGGAGTCTCTTTGCCGAGCTTGTAAATATGCTGTGAGAACATCTGGAAGATTCATGGGAATCACAATT GGAGATATGCTAGAAGAGATTCAAGGCCTGTTCCAGCAGCACCACCAGCCATGCTTCCTTTATCTCTCCAGTGAAGTTATAAAGATATTTGGTTCTGACC CATCATGTGCGTACTATCTGAAAATTTTGATTGAAACCCTCTTCAAGTGCACAACATGTCTTCTCACCAATATCAAGGACTTTACTGCCAGACCAGACAT AGCAGATGATTGTTTTCTGTTGGCATCGAGGTGCATTCGCTATTGCCCTCAAGTATTTATTCCATCCACTGTATTCCCATCATTAGTGGATTGCTCAATG ATTGGCATCACAGTACAACACAGAGAGGCCTCCAATTCCATATTAACTTTCTTGTCAGATGTCTTTGATCTTGCAAAGTCTACCATGGGAGAACAATATT TAACTATCAGAGACAGTGTCATCATTCCCCGAGGTGTCACTATCACCAGAATTTTGGTTGCCTCATTAACTGGAGCACTCCCTAGTTCTCGATTAGAAAC GGTAACATATGCTTTAGTAGCACTAACTCGTGCATATGGAGCAAGTGCACTGGAGTGGGCCAGGGGGAGTGTTTCTTTAATTCCATCAACAGCAGTCACA GAAGTGGAACGAATAAATTTTTGTCAAGCATTGGCCGATGCAGCATCTGGGATCGATGTCAACTCCCTGATGGCTCCAATTGAGGAGCTTTCTGATGTTT GTAGACGTAACAGAACAGTTCAGGAGATTGTTCAAGGAGCTTTAAGGCCGCTTGAGTTGAATTTGGTCACTGTATCATAG
AA sequence Show only first row Show all	>Potri.015G068600.1 pacid=42775881 polypeptide=Potri.015G068600.1.p locus=Potri.015G068600 ID=Potri.015G068600.1.v4.1 annot-version=v4.1 MELQNSVKEALNALYHHPDDVFRMEADRWLQNFQRTIDAWQVADNLLHDATSNLETLIFCSQTLRSKVQRDFEELPSEAFRPLRSSLNTLLKKFHRGPPK VRTQISIAVAALAVQVPPEDWGDGGIVNWLKDEMTSHPEYIPGFLELLTVLPEEVFNYKIAARPERRRQFENELTSQIEVALNILTACLKISELKEQVLE AFSSWIRLRHGIPGSVLACHPLVYTALSSLNSETLSEAVVNVISELIHYTTAGNSGGIPVQMPLIQVIVPQVMSLKEQLRDSSKDEEDVKAIARLFADMG DSYVELIATGSDESMIIVNALLEVASHPEYDIASMTFNFWHNLQHILTKRDSYTSFGNEVSIEVERSRRLQVFHSAYESLVSLVSFRVKYPQDYQTLSVE DLKEFKQTRYAVTDVLIDAASVLGGDATLRILYVKLYEARTCLGNGHNQWHPAEAALFCIRAISNYVSTVEAEVMPKIMSLLLELPHEPQLLQTVCLTIG AYSKWLDASSDGFPLLSSVIKVLLSGMSKSEDSAAAAAVAFRHICDDCRRKLCGYFDELFSIYHSAVIEGGSFKVSAEDSLHMVEAFSMVITELPADQAK QALEKLCLPVVTPLQEIISHGPEVLEKKPARELTVHIDRLAYIFRYVNHPEAVADAIQRLWPILKAIFDIRAWDMQTMESLCRACKYAVRTSGRFMGITI GDMLEEIQGLFQQHHQPCFLYLSSEVIKIFGSDPSCAYYLKILIETLFKCTTCLLTNIKDFTARPDIADDCFLLASRCIRYCPQVFIPSTVFPSLVDCSM IGITVQHREASNSILTFLSDVFDLAKSTMGEQYLTIRDSVIIPRGVTITRILVASLTGALPSSRLETVTYALVALTRAYGASALEWARGSVSLIPSTAVT EVERINFCQALADAASGIDVNSLMAPIEELSDVCRRNRTVQEIVQGALRPLELNLVTVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G62600		MOS14	modifier of snc1-1, 14, ARM re...		Potri.015G068600 [exp]	0	1
AT4G34310			alpha/beta-Hydrolases superfam...		Potri.002G128201 [exp]	4.00	0.6843
AT1G67140		SWEETIE	SWEETIE, HEAT repeat-containin...		Potri.004G101250 [exp]	7.28	0.7282
AT5G07740			actin binding (.1)		Potri.015G061001 [exp]	10.00	0.7019
AT4G35890			winged-helix DNA-binding trans...		Potri.007G063600 [exp]	10.81	0.6782
AT5G04560		DME1, DME	DEMETER, HhH-GPD base excision...		Potri.008G025900 [exp]	14.83	0.6821
AT2G39090		APC7, AtAPC7	anaphase-promoting complex 7, ...		Potri.010G022100 [exp]	16.30	0.6611
AT1G15240			Phox-associated domain;Phox-li...		Potri.001G183100 [exp]	17.94	0.6916
AT1G58060			RNA helicase family protein (....		Potri.004G222900 [exp]	18.97	0.6975
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Potri.010G073600 [exp]	19.07	0.6455
AT5G49430			WD40/YVTN repeat-like-containi...		Potri.010G142700 [exp]	22.78	0.7016

Compare expression of checked genes

Potri.015G068600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.