Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74850 1266 / 0 PDE343, PTAC2 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) AT2G31400 288 / 8e-84 GUN1 genomes uncoupled 1 (.1) AT5G02860 269 / 1e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G18940 268 / 3e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G41720 230 / 6e-64 EMB2654 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT5G01110 215 / 3e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39980 209 / 2e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G18110 205 / 2e-54 EMB1270 embryo defective 1270, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 199 / 2e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G42310 199 / 6e-54 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G193900 [exp] 292 / 9e-86 AT2G31400 1192 / 0.0 genomes uncoupled 1 (.1) Potri.014G118500 [exp] 291 / 2e-85 AT2G31400 1213 / 0.0 genomes uncoupled 1 (.1) Potri.001G297300 [exp] 273 / 5e-79 AT5G02860 1129 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G092100 [exp] 266 / 2e-76 AT5G02860 1146 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G166200 [exp] 248 / 3e-70 AT2G18940 1082 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 246 / 3e-70 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 235 / 4e-66 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G049900 [exp] 233 / 6e-65 AT2G41720 1169 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G046000 [exp] 222 / 9e-62 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033127 [exp] 1308 / 0 AT1G74850 1179 / 0.0 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10036651 [exp] 553 / 0 AT1G74850 502 / 4e-170 PIGMENT DEFECTIVE 343, plastid transcriptionally active 2 (.1) Lus10003657 [exp] 277 / 2e-81 AT2G31400 902 / 0.0 genomes uncoupled 1 (.1) Lus10022290 [exp] 276 / 4e-81 AT2G31400 911 / 0.0 genomes uncoupled 1 (.1) Lus10013894 [exp] 274 / 1e-78 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10002107 [exp] 270 / 3e-78 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015530 [exp] 255 / 2e-72 AT2G18940 1010 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020002 [exp] 254 / 3e-72 AT2G18940 1015 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042068 [exp] 232 / 2e-64 AT2G41720 1057 / 0.0 EMBRYO DEFECTIVE 2654, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10006962 [exp] 228 / 3e-63 AT2G18940 976 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.015G069100.7 pacid=42776448 polypeptide=Potri.015G069100.7.p locus=Potri.015G069100 ID=Potri.015G069100.7.v4.1 annot-version=v4.1 ATGACCCTATCTCCTTCCCTCTCCATCCCCAGCCCCTCGCCCATCTCCACTAAAAGCATCAAAGCCAAACACACCTTCCCATTCCCAATCCTTCCTTCCC ACCGCCGACTAGTCTCCTTCTCTAGCGACCGGAAAGCCTATTCCGGCGCCTGGAAAGCCAGAGCTAAGCCGAAAGAACTCGTCCTCGGCAACCCTTCCGT AGTCGTCGAGAAAGGCAAGTACAGTTACGATGTCGAAACCCTAATTAACAAACTAAGCAGCTTACCTCCACGCGGCAGCATAGCAAGATGTCTCGACGTT TTCAAAAACAAGCTTTCGCTAAACGACTTCGCTCTGGTCTTCAAGGAATTCGCGCAGCGCGGTGATTGGCAAAGGTCGCTACGGCTCTTCAAGCATATGC AGCGTCAAATATGGTGTAAGCCAAATGAGCATATTTATACAATTATGATTAGTTTGTTAGGCCGCGAAGGCCTCCTCGAAAAATGCAGCGATATTTTCGA GGAAATGGGTGCGCACGGAGTGTCACGCAGTGTGTTTTCCTACACTGCATTGATTAATTCCTACGGCCGGAATGGTAAGTATGAGGTCTCTCTTGAATTA CTTGAAAGAATGAAGAAGGAAAGGGTTTCGCCCAGTATTTTGACGTATAATACTGTTATTAATTCGTGTGCGAGAGGTGGGTTAGATTGGGAGGGTCTGC TAGGTTTGTTTGCCGAAATGAGGCATGAAGGAATACAACCTGATATTGTCACATATAATACTCTGCTTTGTGCTTGTTCTAATAGGGGATTAGGGGATGA GGCAGAGATGGTATTTAGGACAATGAATGAAGGAGGGGTTGTGCCTGATATAACAACTTACACTTATCTTGTTGATACTTTTGGGAAATTGAATAGGTTA GACAAGGTTAGCGAATTGCTCAAGGAGATGGCTTCTACTGGCAATGTACCTGAGATTTCATCGTATAATGTGTTATTAGAGGCATATGCAAGAATAGGGA ATATTGAGGATGCTACGGGGGTGTTTCGGCTGATGCAAGAAGCGGGGTGTGTGCCCAATGCAGAGACGTATAGTATATTGTTGGGTTTGTATGGGAAGCA TGGGAGGTATGATGAAGTAAGAGAGCTATTTTTGGAGATGAAAGTGAGTAACACGGAGCCTGATGCGGCTACATATAATACACTTATAGATGTATTTGGT GAGGGTGGGTATTTTAAGGAGGTGGTGACATTGTTTCATGATATGGCGGAGGAAAATGTTGAGCCGAATATGGAAACTTATGAGGGGTTGATATTTGCTT GTGGGAAAGGTGGGCTACATGATGATGCTAAGAAGATTTTACTTCATATGAGTGAAAAGGGGATGATACCAAGTTCAAAGGCATATACTGGAGTTATTGA AGCATATGGACAAGCTGCGATGTATGAGGAAGCTCTTGTGACGCTTAATACTATGAATGAAATGGGCAGCAAGCCAACAATTGAGACTTACAATACGCTG ATTTACATGTTTGCAAGAGGTGGGTTATACAAGGAAACTGAAGCTATTTTGTTGAAAATGGGTGATTTTGGGGTTGCTAGGGACAGGGATTCTTTCAATG GTGTGATTGAAGGCTTTAGACAAGGCGGTCAGTTTGAAGAAGCTATTAAGGCTTATGTTGAGATGGAAAAATCTAGATTAGTTCCTGATGAACGGACACT TGAGGCAGTCTTAAGTGTTTATTGCATCGCGGGTCTTGTTGATGAGAGTGTGGAGCAATTTCAGGAAATTAAAGCATCGGGAATATTGCCGAATGTCATG TGCTATTGTATGATGCTGGCTGTTTATGCTAAGAGTGATAGATGGAATGAGGCCTATGAGCTTCTTGATGAGATGTTAACGAATAGAGCGTCAAATATCC ATCAAGTGATTGGGCAGATGATCAAGGGAGATTTTGATGATGACTCTAACTGGCAAATGGTAGAGTATGTTTTTGACAAACTTAATTCTGAAGGGTGTGG CTTGGGAATGAGGTTTTATAATACACTTCTAGAAGCACTATGGTGGCTCGGTCAGAAAGAACGGGCTGTAAGGGTTCTTGGTGAAGCAACAAAGAGAGGG CATTTCCCTGAACTTTTCCGTAAAAGCAAACTTGTGTGGTCTGTGGATATTCACAGGATGTGGGAAGGAAGTGCATACACAGCAATATCTGTTTGGCTCA ATAACATGTACGAGATTTTCATGAATAGACAGGATATTCCCCAACTTGCATCAGTCATTGTGGTACGGGGACTGTTGGAGAAAAGCTCAGTTGCACAAGA TTTTCCAATTGGGAAGGCTGTACATTCGTTTCTGCAGGATATTGTGCCATCTTCATTTTCTTACTCTGGATGGAACAATGGTCGAATTACCTGCCAACGT TCCCAGCTCAAGCGCTTTCTGTTGGGAACAGAATTAGTTTCAGATGGGACCAAGAAAGATAAATTCATTATGTTAACTAACTCCCCTTTTTCTCTTGCTG GAACAAGAACATCGAGTGATATTGAGACTAGCCTACACAACAAATCCAATTCTGGAGCTAGAATGGGAACCAGTACAGAGCTTATGACAAGCACAGTTTA A
AA sequence Show only first row Show all	>Potri.015G069100.7 pacid=42776448 polypeptide=Potri.015G069100.7.p locus=Potri.015G069100 ID=Potri.015G069100.7.v4.1 annot-version=v4.1 MTLSPSLSIPSPSPISTKSIKAKHTFPFPILPSHRRLVSFSSDRKAYSGAWKARAKPKELVLGNPSVVVEKGKYSYDVETLINKLSSLPPRGSIARCLDV FKNKLSLNDFALVFKEFAQRGDWQRSLRLFKHMQRQIWCKPNEHIYTIMISLLGREGLLEKCSDIFEEMGAHGVSRSVFSYTALINSYGRNGKYEVSLEL LERMKKERVSPSILTYNTVINSCARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLCACSNRGLGDEAEMVFRTMNEGGVVPDITTYTYLVDTFGKLNRL DKVSELLKEMASTGNVPEISSYNVLLEAYARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVSNTEPDAATYNTLIDVFG EGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKILLHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGSKPTIETYNTL IYMFARGGLYKETEAILLKMGDFGVARDRDSFNGVIEGFRQGGQFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVM CYCMMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVIGQMIKGDFDDDSNWQMVEYVFDKLNSEGCGLGMRFYNTLLEALWWLGQKERAVRVLGEATKRG HFPELFRKSKLVWSVDIHRMWEGSAYTAISVWLNNMYEIFMNRQDIPQLASVIVVRGLLEKSSVAQDFPIGKAVHSFLQDIVPSSFSYSGWNNGRITCQR SQLKRFLLGTELVSDGTKKDKFIMLTNSPFSLAGTRTSSDIETSLHNKSNSGARMGTSTELMTSTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	0	1
AT5G03900			Iron-sulphur cluster biosynthe...		Potri.004G090400 [exp]	1.00	0.9825
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.010G022400 [exp]	2.00	0.9783
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	4.35	0.9602
AT4G30825			Tetratricopeptide repeat (TPR)...		Potri.006G005100 [exp]	4.89	0.9583
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Potri.018G024300 [exp]	5.65	0.9613
AT2G02070	C2H2ZnF	ATIDD5	indeterminate(ID)-domain 5 (.1...		Potri.010G099200 [exp]	6.24	0.9636
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.009G131300 [exp]	6.48	0.9710
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	7.07	0.9741
AT1G67840		CSK	chloroplast sensor kinase (.1....		Potri.010G047500 [exp]	7.21	0.9505
AT5G26742		EMB1138	embryo defective 1138, DEAD bo...		Potri.005G000500 [exp]	7.48	0.9747

Compare expression of checked genes

Potri.015G069100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.