Plant FIBer expression Database

Potri.015G069700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G62020 2100 / 0 Coatomer, alpha subunit (.1)
AT2G21390 2091 / 0 Coatomer, alpha subunit (.1)
AT3G15980 255 / 1e-70 Coatomer, beta' subunit (.1.2.3.4.5)
AT1G52360 251 / 8e-69 Coatomer, beta' subunit (.1.2)
AT1G79990 248 / 4e-68 structural molecules (.1.2.3.4.5)
AT3G49660 120 / 1e-29 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
AT5G08390 105 / 1e-22 Transducin/WD40 repeat-like superfamily protein (.1)
AT5G23430 102 / 8e-22 Transducin/WD40 repeat-like superfamily protein (.1.2)
AT1G61210 102 / 1e-21 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
AT4G02730 98 / 1e-21 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G074800
[exp]
2283 / 0 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1)
Potri.003G056300
[exp]
255 / 1e-70 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2)
Potri.001G179200
[exp]
251 / 3e-69 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2)
Potri.006G250200
[exp]
176 / 5e-48 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2)
Potri.005G148500
[exp]
120 / 2e-29 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Potri.007G009500
[exp]
115 / 1e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Potri.002G051900
[exp]
112 / 8e-27 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Potri.008G002300
[exp]
108 / 7e-24 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Potri.010G255400
[exp]
107 / 2e-23 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040752
[exp]
2111 / 0 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1)
Lus10016481
[exp]
2107 / 0 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1)
Lus10011454
[exp]
2083 / 0 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1)
Lus10025780
[exp]
1535 / 0 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1)
Lus10037538
[exp]
1412 / 0 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1)
Lus10035883
[exp]
1298 / 0 AT1G62020 1288 / 0.0 Coatomer, alpha subunit (.1)
Lus10037539
[exp]
566 / 0 AT1G62020 594 / 0.0 Coatomer, alpha subunit (.1)
Lus10033092
[exp]
251 / 6e-69 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2)
Lus10026094
[exp]
174 / 3e-48 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5)
Lus10002324
[exp]
170 / 2e-46 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF00400 WD40 WD domain, G-beta repeat
CL0186 Beta_propeller PF04053 Coatomer_WDAD Coatomer WD associated region
CL0020 TPR PF06957 COPI_C Coatomer (COPI) alpha subunit C-terminus
Representative CDS sequence
>Potri.015G069700.2 pacid=42775033 polypeptide=Potri.015G069700.2.p locus=Potri.015G069700 ID=Potri.015G069700.2.v4.1 annot-version=v4.1
ATGTTGACCAAGTTTGAGACCAAGAGTAATAGAGTGAAGGGGCTGAGTTTCCACAGTAAGAGACCATGGATCCTTGCTAGCCTTCACAGTGGTGTGATCC
AGCTATGGGACTATCGTATGGGCACTCTCATTGATCGCTTTGATGAGCATGATGGCCCTGTTCGTGGTGTTCATTTCCACAAATCTCAGCCTCTTTTTGT
ATCTGGAGGTGATGATTACAAGATTAAAGTCTGGAACTACAAATTGCATAGGTGTCTGTTTACGCTCCTTGGACATCTTGATTACATTCGCACTGTGCAG
TTTCATCATGAATACCCATGGATTGTGAGTGCTAGTGATGATCAGACCATCCGCATTTGGAACTGGCAGTCTCGTACTTGCATTTCTGTGTTGACAGGAC
ACAATCATTATGTGATGTGTGCCTCATTCCACCCTAAAGAAGACCTTGTTGTGTCGGCTTCTCTAGATCAGACTGTTCGTGTTTGGGATATTGGTGCTCT
GAGAAAAAAGACGGTGTCCCCTGCTGATGACATCATGAGGTTGACTCAGATGAACAGTGACCTTTTTGGTGGTGTTGATGCAGTTGTTAAGTATGTTTTG
GAAGGCCATGACCGAGGTGTCAACTGGGCTGCATTCCACCCTACACTTCCTTTGATTGTTTCAGGAGCAGATGATCGCCAAGTGAAGTTGTGGCGCATGA
ATGACACAAAGGCCTGGGAAGTGGACACATTAAGAGGACACATGAACAATGTGTCATGTGTTATGTTCCATGCCAAACAAGATATAATTGTATCTAATTC
AGAGGATAAAAGCATTCGTGTCTGGGATGTAACTAAACGAACTGGAGTCCAAACTTTCCGCCGAGAGCATGACCGATTCTGGATCCTTGCATCCCATCCT
GAGATGAATCTTCTGGCTGCAGGTCACGACAGTGGCATGATTGTCTTTAAGTTAGAGAGAGAAAGGCCTGCTTTTGCTGTGAGTGGTGATTCTTTGTTCT
ATGCCAAAGATCGCTTTTTACGATTTTTTGAGTTTTCAACTCAAAGAGATACACAAGTAATTCCCATTCGACGACCTGGTACTACAAGCCTGAATCAAAG
TCCAAGAACTCTTTCGTACAGTCCTACAGAAAATGCTGTCCTTATCTGTTCGGATGTGGATGGAGGATCTTACGAGCTGTACGTCATCCCTAGAGACAGC
ATTGCTAGGGGTGATGCTGTGCCAGAGGCAAAGAGAGGTGTTGGTGGATCTGCTGTCTTTGTAGCTCGGAATAGGTTTGCTGTGCTTGACAAGAGCAGCA
ATCAAGTATTAGTTAAGAACCTCAAGAATGAAGTTGTCAAAAAGAGCAGTCTTCCCATCTCTGCAGATGCTATATTCTATGCTGGCACAGGTAACTTGCT
TTGCAGGACAGAGGATAGGGTGGTCATATTTGATCTCCAGCAGAGGCTTGTTCTTGGGGAGCTGCAGACACCTTTTATCAAGTATGTTATTTGGTCCAAT
GACATGGAAAGTGTTGCCTTGCTAAGCAAACATGCCATTATCATTGCTAGCAAGAAGCTTGTGCACCAGTGCACTCTCCACGAAACAATTCGTGTAAAGA
GTGGAGCCTGGGATGATAATGGTGTTTTCATTTACACGACTTTGAATCATATCAAATACTGCCTGCCCAATGGAGATAGTGGCATTATCAGAACCCTCAA
TGTCCCCATATATATTACTAAGATTTCTGGAAATACTATCTTTTGCTTGGATCGGGATGGGAAGAATAAGGCTATTGTTATTGATGCAACAGAATACATC
TTCAAACTATCTCTGCTGAAGAAGAAATATGAAAATGTTATGAGCATGATAAGGAACTCCCAGCTTTGTGGTCAGGCAATGATTGCTTATTTGCAACAGA
AGGGGTTCCCAGAAGTCGCTCTGCATTTTGTGAAAGATGAGAGAACTAGGTTTAATTTGGCTTTAGAGAGTGGAAATATTCAGATTGCTGTTGCTTCAGC
AAAGGAAATTGATGAGAAAGACCACTGGTATAGGTTGGGGGTTGAAGCTCTTCGCCAAGGGAATGCAGGTATAGTTGAATATGCCTACCAGAGGACAAAA
AATTTTGAGAGGTTATCTTTCCTTTATCTCGTAACTGGGAATTTGGAAAAGCTCTCTAAGATGCTTAGAATTGCTGAAGTTAAAAATGATGTCATGGGTC
AGTTTCACAATGCCTTGTATTTGGGTGATGTCAGAGAACGTGTTAAGATCCTGGAGAATGCTGGCCATTTGCCACTTGCTTATGCCACAGCTAAGGTCCA
TGGCCTAGAGGATGTTGTGGAACGTCTAGCAGCTGAGTTGGGAGATGATATTCCGTCTTTGCCAGAGGGCAAAACACCATCCCTTCTGATGCCTCCAGCC
CCTATTATGTGCGGTGGTGATTGGCCACTTCTGAGAGTTATGAAAGGTATATTTGAAGGTGGGCTGGATAATATGGGCAGAGGTGGTGCTGATGAGGACG
AAGAAGCTGCTGATGGTGACTGGGGTGAGGAACTGGACATGGTTGATGTGGATGGTTTGCAAAATGGGGATGTCTCAGCAATTTTGGAGGATGGGGAAGC
AGCTGAAGAAAATGAAGAGGAGGGAGGATGGGACCTTGAAGATCTGGAGCTACCTCCCGAGGCAGACACACCAAGGGCTTCTGTCAGTGCCCGCTCATCA
GTTTTTGTGGCTCCAACTCCTGGTATGCCTGTAAGTCAGATTTGGATTCAGAGATCTTCACTCGCTGCTGAACATGCCGCAGCTGGCAATTTTGATACGG
CTATGCGACTACTCAACAGACAACTTGGAATTAAAAACTTTGTCCCATTAAAGTCCATGTTTCTTGATCTTTACTCAGGCAGCCATACCTATCTTCGTGC
ATTTTCATCTACCCCAGTGATATCACTGGCTGTTGAACGGGGATGGAATGAGTCTGCTAGCCCTAATGTTAGGGGTCCTCCAGCTCTGGTGTTCAATTTC
TCTCAGTTGGAAGAGAAGCTTAAGGCTGGTTACAAGGCCACGACAACTGGGAAATTTACTGAGGCACTTAGACTCTTCCTTGGCATTCTTCACACAATTC
CTCTGATTGTTGTTGATTCGAGGAGGGAAGTTGATGAAGTCAAGGAGTTGATTATTATAGTCAAAGAGTATGTTTTGGGTCTCCAAATGGAGCTTAAGAG
GAGGGAGATGAAAGACAATCCAGTGCGCCAACAAGAGCTTGCTGCGTACTTCACCCACTGCAACCTTCAAGCTCCTCACTTAAGGCTTGCTCTTCAAAAT
GCAATGACTGTTTGCTTCAAGAATAAGAACCTTGCTACAGCAGCTAACTTTGCCAGGCGGCTACTGGAGACAAACCCCCCGAATGAGAACCAGGCAAGGG
CTGCCAGGCAAGTATTGGCAGCTGCAGAGAGGAGCATGACGGATGCCGCTCAGCTGAACTATGATTTCAGAAATCCATTTGTGGTATGTGGTGCAACCTA
TGTTCCAATTTACCGAGGACAAAAGGACGTCTCTTGTCCATATTGTGGTTCCCGATTTGTACCAAGCCAGGAAGGGCAGCTGTGTACTGTGTGTGATCTT
GCAGTAGCTGGGGCAGATGCTTCAGGGTTGCTCTGTTCCCCTTCCCAGATACGATGA
AA sequence
>Potri.015G069700.2 pacid=42775033 polypeptide=Potri.015G069700.2.p locus=Potri.015G069700 ID=Potri.015G069700.2.v4.1 annot-version=v4.1
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHKSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQ
FHHEYPWIVSASDDQTIRIWNWQSRTCISVLTGHNHYVMCASFHPKEDLVVSASLDQTVRVWDIGALRKKTVSPADDIMRLTQMNSDLFGGVDAVVKYVL
EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDVTKRTGVQTFRREHDRFWILASHP
EMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYAKDRFLRFFEFSTQRDTQVIPIRRPGTTSLNQSPRTLSYSPTENAVLICSDVDGGSYELYVIPRDS
IARGDAVPEAKRGVGGSAVFVARNRFAVLDKSSNQVLVKNLKNEVVKKSSLPISADAIFYAGTGNLLCRTEDRVVIFDLQQRLVLGELQTPFIKYVIWSN
DMESVALLSKHAIIIASKKLVHQCTLHETIRVKSGAWDDNGVFIYTTLNHIKYCLPNGDSGIIRTLNVPIYITKISGNTIFCLDRDGKNKAIVIDATEYI
FKLSLLKKKYENVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFNLALESGNIQIAVASAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTK
NFERLSFLYLVTGNLEKLSKMLRIAEVKNDVMGQFHNALYLGDVRERVKILENAGHLPLAYATAKVHGLEDVVERLAAELGDDIPSLPEGKTPSLLMPPA
PIMCGGDWPLLRVMKGIFEGGLDNMGRGGADEDEEAADGDWGEELDMVDVDGLQNGDVSAILEDGEAAEENEEEGGWDLEDLELPPEADTPRASVSARSS
VFVAPTPGMPVSQIWIQRSSLAAEHAAAGNFDTAMRLLNRQLGIKNFVPLKSMFLDLYSGSHTYLRAFSSTPVISLAVERGWNESASPNVRGPPALVFNF
SQLEEKLKAGYKATTTGKFTEALRLFLGILHTIPLIVVDSRREVDEVKELIIIVKEYVLGLQMELKRREMKDNPVRQQELAAYFTHCNLQAPHLRLALQN
AMTVCFKNKNLATAANFARRLLETNPPNENQARAARQVLAAAERSMTDAAQLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCGSRFVPSQEGQLCTVCDL
AVAGADASGLLCSPSQIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G62020 Coatomer, alpha subunit (.1) Potri.015G069700
[exp]
0 1
AT1G52360 Coatomer, beta' subunit (.1.2) Potri.001G179200
[exp]
2.44 0.9420
AT1G52360 Coatomer, beta' subunit (.1.2) Potri.003G056300
[exp]
2.82 0.9390
AT2G07360 SH3 domain-containing protein ... Potri.018G149400
[exp]
5.65 0.9177
AT4G23460 Adaptin family protein (.1) Potri.001G101400
[exp]
6.48 0.9140
AT1G71270 ATVPS52, TTD8, ... T-DNA TRANSMISSION DEFECT 8, P... Potri.006G027100
[exp]
8.30 0.9328 Pt-POK.1
AT3G11130 Clathrin, heavy chain (.1) Potri.009G073300
[exp]
8.77 0.9163
AT3G50590 Transducin/WD40 repeat-like su... Potri.007G041000
[exp]
12.00 0.9102
AT5G15470 GAUT14 galacturonosyltransferase 14 (... Potri.004G124500
[exp]
12.96 0.9029
AT3G16630 ATKINESIN-13A, ... P-loop containing nucleoside t... Potri.010G013500
[exp]
13.41 0.9227
AT1G62020 Coatomer, alpha subunit (.1) Potri.012G074800
[exp]
15.09 0.8650

Potri.015G069700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.