Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70140 484 / 2e-160 ATFH8 formin 8 (.1) AT1G59910 451 / 2e-145 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 371 / 3e-117 ATFH4, FH4 formin homologue 4 (.1) AT3G05470 305 / 5e-91 Actin-binding FH2 (formin homology 2) family protein (.1) AT3G25500 301 / 3e-88 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT5G54650 289 / 6e-85 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT5G67470 289 / 8e-85 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT4G15200 283 / 1e-83 AFH3 formin 3 (.1.2) AT2G43800 260 / 2e-74 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 179 / 6e-47 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G037900 [exp] 527 / 1e-176 AT1G70140 488 / 4e-162 formin 8 (.1) Potri.008G192900 [exp] 489 / 5e-162 AT1G70140 499 / 2e-166 formin 8 (.1) Potri.001G416100 [exp] 323 / 3e-97 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.005G026300 [exp] 316 / 2e-94 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.011G131700 [exp] 316 / 3e-94 AT5G54650 590 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.013G017900 [exp] 313 / 2e-93 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.007G054900 [exp] 311 / 4e-93 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G119900 [exp] 301 / 2e-89 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G140200 [exp] 301 / 8e-89 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004244 [exp] 465 / 5e-156 AT1G70140 396 / 6e-130 formin 8 (.1) Lus10029212 [exp] 443 / 2e-148 AT1G70140 491 / 6e-168 formin 8 (.1) Lus10042154 [exp] 437 / 5e-146 AT1G70140 377 / 1e-123 formin 8 (.1) Lus10010724 [exp] 398 / 2e-129 AT1G70140 442 / 2e-147 formin 8 (.1) Lus10004505 [exp] 317 / 9e-96 AT3G05470 628 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10029897 [exp] 300 / 1e-89 AT3G05470 618 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10019298 [exp] 301 / 1e-88 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10011524 [exp] 298 / 1e-87 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10031496 [exp] 295 / 1e-87 AT3G05470 608 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Lus10025195 [exp] 296 / 3e-87 AT5G67470 642 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.015G069800.2 pacid=42775870 polypeptide=Potri.015G069800.2.p locus=Potri.015G069800 ID=Potri.015G069800.2.v4.1 annot-version=v4.1 ATGATGGTCCAGCCGCGGTTCCATCCATGTCTCATTTTCTTACTGTTTTTCTCCCCTCCCCTTTCTCATTCTTATTGTAAACAAAACTCCTCACAGAAGA CAGAAATTTCTCCTGCATTTGATTCTTCACCTGCAAGTTCAATGATAAGATCTGCAAGTTATGAAGCAGTCTCTCCCGATCATGATAGGGAGAGACTGAT GCCTCAACTCTTGGGACCTCCTGCCCGGAAACAGGCAATGGAGGAGTCCTCATCGTCAAATGGAAAAGTTGTGGCAGCCATTGTTGTCACAGCTGCAATC ACTCTGGCCATTGCTGTGATCTTCTTCTTTATCTACTTGAAATTTGCCAAAAAGCGGGAAAAAGTTATGGCAACTAGTGACGAGCTCAAAAAAGTTAGCA GAAAAGTGAAAAAGTTTACCTTCGATGAAAATGGGCAGGGTTTGCTTTATGTAAAAAGTTTTGACAGGAAACCCAAAAACACTTTCTCAAAGGTTACGCT GAACCCTAGCTATGAAGAAGAAGGGGAAGAAAAGAGGGTGGATGTGATAGTAGAGCAATTAAAAAAGTATGAGCCACAGGAAGTTTTGCTTTCATCTTAT GGAATTGGTCATGGGAAAGTAACAGAACCAGTTTTGCGAAATGGAGAACCTACAGCATCAGTTACAGAAATGGAAAGTCCAAAATTACCTCCTCTACAAT CCCCTCCAAGAAAGAAAATCCCACCACCACCTCCGCCGCCGCCGCCGCCTCCTCCTCATCCACCACCGCCTCCTCCGCCTCCGCCTCCGCCTCCGCCTAC ATCAACAAAACCACCACTTATAACAAAGAAAAATCCTGCATCACCACCCCCACCACCTAAAATAGGCGGTTTAATCTCATTACTGAAACCTCCACCAGTT CCAAGAGGGAAATTAAATAGCAAGAGCAGGGAATGGGCTCCAACAGAGGGAAGCTTGAGAGGGACTAGCAGTGGGCATACAAAACTAAAGCCACTGCACT GGGATAAAGTAACAGCCGATGTTGATCATTCAGTGGTTTGGGATGAGATTAATAATGGCTCTCTCAGATTTGATGACGACCTAATAGAAACATTGTTTGG ATATACAACTGCCAATAACAAAATCCTTCTCAGAAATGAAGTTTCATCAAGTAGAAGCAGCTCCAACCCTACCCCAGCTACTCAAGTTTTCATCCTTGAA CCAAGGAAGTCTCAAAACACAGCAATTGTACTAAAATCTTTAGCAATTTCTCGCAAAGAAATTCTTGATGCTCTTCTCGAGGGTCATGGACTTAATACAG ATGTCCTCGAAAAGCTTACCAGAATTTCCCCGACTCAAGAAGAAGCAGTCAAAATCACCCAATACAGGGGCAACCCATCTAAACTTGCAGATGCTGAATC TTTCCTTCACCACATCCTGAAGGCTATTCCTTCGGCATTCATCCGTATCAATGCAATGCTTTTCAGATCAAATTATGATTCAGAAATTCTTCATCTAAAG GAGTCCTTACAAACACTTGAATCGGGGTGCAAAGAGCTACGAACCCGTGGCCTCTTCTTAAAACTTCTTGAAGCCATTCTCAAGGCTGGCAACAGGATGA ATGCTGGAACATCCAGAGGCAATGCACAAGGTTTCAACCTTACTGCTCTTAGAAAGCTTTCCGATGTTAAAAGCACAGACGGGAAGACTACTCTACTTCA CTTTGTTGTAGAACAAGTAGTTCGATCAGAAGGTAGACGTCGTGTACTTAATCGGAACCATAGTATGGAAAGAAGTGACAGTCAAAGAAGGATAAACAGT GATTTGAATTCAGACACATTGACGGAAGAGAGAAACAAAGAGTACCTGTTGTTGGGACTACCAGCATTGAGGGACATGATTGCTGAATTCTCCAACGTTA AAAGAGCAGCCGCAATAGAATTTGACAGTTTCGTCAACACATGCTCCTCTCTCACAGCTCGTGTCACAGAAACTCAGCAACTCGTGGTAAACTTTGGCAA TAGTGAGGCTGGTGGGTTTTTGATGCAAATGAAAGGATTCTTGGAGGATTGCGAAGAGGAGCTTAAGGTGGTCAGAGATGAGCAAAAAAGGATTATGGAG GTTGTTAAGAGAACAACAGAGTATTACCAAGCAGGAGCATCAAAACAGAAAGAAGCAAATCTGCTTCAACTGTTTGTTATAGTGAAAGATTTTCTTGACA TGGTTGATCGAGTCAGTGTAGACATATCCCAGAAGGTGCAGAAGAAAAATGTGGCAGCAAGAGCAGGATCATCATCACCACCTTCACCTCCATCAAGTAA TCCAGTGAGATTTCCAGACTTCCGTTTACATCCTATGTCAGATATGTCAAGGGCAACATCTTGGAGTGAATCAGATGATGGTTTCTGA
AA sequence Show only first row Show all	>Potri.015G069800.2 pacid=42775870 polypeptide=Potri.015G069800.2.p locus=Potri.015G069800 ID=Potri.015G069800.2.v4.1 annot-version=v4.1 MMVQPRFHPCLIFLLFFSPPLSHSYCKQNSSQKTEISPAFDSSPASSMIRSASYEAVSPDHDRERLMPQLLGPPARKQAMEESSSSNGKVVAAIVVTAAI TLAIAVIFFFIYLKFAKKREKVMATSDELKKVSRKVKKFTFDENGQGLLYVKSFDRKPKNTFSKVTLNPSYEEEGEEKRVDVIVEQLKKYEPQEVLLSSY GIGHGKVTEPVLRNGEPTASVTEMESPKLPPLQSPPRKKIPPPPPPPPPPPPHPPPPPPPPPPPPPTSTKPPLITKKNPASPPPPPKIGGLISLLKPPPV PRGKLNSKSREWAPTEGSLRGTSSGHTKLKPLHWDKVTADVDHSVVWDEINNGSLRFDDDLIETLFGYTTANNKILLRNEVSSSRSSSNPTPATQVFILE PRKSQNTAIVLKSLAISRKEILDALLEGHGLNTDVLEKLTRISPTQEEAVKITQYRGNPSKLADAESFLHHILKAIPSAFIRINAMLFRSNYDSEILHLK ESLQTLESGCKELRTRGLFLKLLEAILKAGNRMNAGTSRGNAQGFNLTALRKLSDVKSTDGKTTLLHFVVEQVVRSEGRRRVLNRNHSMERSDSQRRINS DLNSDTLTEERNKEYLLLGLPALRDMIAEFSNVKRAAAIEFDSFVNTCSSLTARVTETQQLVVNFGNSEAGGFLMQMKGFLEDCEEELKVVRDEQKRIME VVKRTTEYYQAGASKQKEANLLQLFVIVKDFLDMVDRVSVDISQKVQKKNVAARAGSSSPPSPPSSNPVRFPDFRLHPMSDMSRATSWSESDDGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70140		ATFH8	formin 8 (.1)		Potri.015G069800 [exp]	0	1
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.010G140500 [exp]	2.82	0.7349
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.008G050300 [exp]	6.00	0.7175
AT2G42410	C2H2ZnF	ATZFP11, ZFP11	zinc finger protein 11 (.1)		Potri.002G041700 [exp]	8.66	0.7388
AT5G12235		CLE22	CLAVATA3/ESR-RELATED 22 (.1)		Potri.016G034950 [exp]	9.64	0.6427
					Potri.001G055675 [exp]	13.26	0.6977
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Potri.012G032000 [exp]	15.81	0.6585
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.015G118101 [exp]	25.29	0.7230
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.017G140000 [exp]	30.21	0.6805	EXP2.10
AT2G21385			unknown protein		Potri.009G121902 [exp]	31.12	0.6767
AT5G11190	AP2_ERF	SHN2, SHN3	shine2, Integrase-type DNA-bin...		Potri.018G028000 [exp]	32.03	0.6919

Compare expression of checked genes

Potri.015G069800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.