Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48120 161 / 8e-47 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042150 [exp] 183 / 5e-55 AT3G48120 183 / 3e-55 unknown protein Lus10004240 [exp] 177 / 1e-52 AT3G48120 177 / 9e-53 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.015G070100.1 pacid=42775801 polypeptide=Potri.015G070100.1.p locus=Potri.015G070100 ID=Potri.015G070100.1.v4.1 annot-version=v4.1 ATGGAGGAAGAGAAAGCTGCGGCGTACTACGAAGAGCTCACTCGAAAAGGCCAAGGCGCCGCGCGCTTCAAGCAAGGCCTCGGCTTCTCCGCCAATAAGG ACGTTGCCGCTCCTCCTCCGAGAGGCTCAGCTCTCCCTTCCTCCACCGCTTCTTTTTTAAGCAATTTTGTTAAAGCCTCTAGTCCTACACAAGCTTCAAA TCTTGAAAGGCAAGCTCAGCTCGAATCAATTCAAAACAAACTCAAGAAGAAACCCAAAGATGAGGCGTCAGAGAGAAGCAGAAGAGAATCGGGCCATCAC AGGCATCGATCGAGGTCGAGAAGTAGAGAGAGGAATCACAGGAAGCGAAGCAGAAGCAAAAGCCGAGAGAGGAATTATAGGCGTAGAAGCCGAAGCCGAA GCCGAGAGAGGTATAGAGATGGAGAGAGGAGAAGGAACCGGAGATTGGAGACAAGAAGCCGAAGTCGTGGTTTATCGCCACGAGAGGGCAGAAGGTCGGA GAAGAGAAGGGGTGATGATGTGGAAAGGGAGAGAGCAGGGAAGGAGAAGAATGGCAGCATTGATTATTCGCGGTTGATTGAAGGTTATGAGAAAATGACA CCAGCTGAAAGAGTCAAAGCTAGGATGAAACTTCAGCTTAATGAAACTGCTAAAAAGGATGAGGGAATGGGCTCTGGTTGGGAGCGGTTTGTGTTCAACA AGGATGCCCCACTTGATGATGAGGAAGTTGAAGCTGTGGAAGATGATGCAGCACTAGTCAAGCACTTAGGCCAGAGTTTCCGTTTCTCTGCAGTGGAGGC AAGAAGGGAAGAGCAAATCAAAGTTGCTCACGATGAGGCCATGTTTGGTGCACCATCACTTTTGGCATCTGTTACTTCAGACAATGAGATAGAGATGGAC AACAATAGAAACGAGAGCAAAGACACCGACCATGCTTCTAGCCTTCTAAGTGAGAAGGTACTTGCAAAGCAGCAAGGTTCCTGGCGCGACCGTGCTCGTA AAGTGTAG
AA sequence Show only first row Show all	>Potri.015G070100.1 pacid=42775801 polypeptide=Potri.015G070100.1.p locus=Potri.015G070100 ID=Potri.015G070100.1.v4.1 annot-version=v4.1 MEEEKAAAYYEELTRKGQGAARFKQGLGFSANKDVAAPPPRGSALPSSTASFLSNFVKASSPTQASNLERQAQLESIQNKLKKKPKDEASERSRRESGHH RHRSRSRSRERNHRKRSRSKSRERNYRRRSRSRSRERYRDGERRRNRRLETRSRSRGLSPREGRRSEKRRGDDVERERAGKEKNGSIDYSRLIEGYEKMT PAERVKARMKLQLNETAKKDEGMGSGWERFVFNKDAPLDDEEVEAVEDDAALVKHLGQSFRFSAVEARREEQIKVAHDEAMFGAPSLLASVTSDNEIEMD NNRNESKDTDHASSLLSEKVLAKQQGSWRDRARKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48120			unknown protein		Potri.015G070100 [exp]	0	1
AT4G11560			bromo-adjacent homology (BAH) ...		Potri.003G127400 [exp]	2.64	0.8799
AT4G03030			Galactose oxidase/kelch repeat...		Potri.002G041900 [exp]	4.47	0.8129
AT5G56930	C3HZnF	EMB1789	embryo defective 1789, CCCH-ty...		Potri.006G148400 [exp]	6.32	0.8535
AT1G22310		ATMBD8, MBD8	methyl-CPG-binding domain 8 (....		Potri.001G312900 [exp]	6.48	0.8357
AT1G77180		SKIP	chromatin protein family (.1.2...		Potri.006G163700 [exp]	10.53	0.8478
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Potri.001G377400 [exp]	11.61	0.8196
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Potri.015G142900 [exp]	18.11	0.8332
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.010G220000 [exp]	18.11	0.8423
					Potri.003G082900 [exp]	18.33	0.8192
AT5G40400			Pentatricopeptide repeat (PPR)...		Potri.017G071600 [exp]	21.77	0.8403

Compare expression of checked genes

Potri.015G070100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.