Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74900 590 / 0 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 203 / 1e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 202 / 1e-57 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 198 / 3e-57 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 200 / 3e-56 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 194 / 7e-55 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 192 / 5e-54 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G71060 189 / 9e-54 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 191 / 1e-53 RPF2 rna processing factor 2 (.1) AT1G09900 190 / 1e-53 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181900 [exp] 221 / 2e-66 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 206 / 2e-59 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G114700 [exp] 204 / 4e-59 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 203 / 1e-58 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 201 / 4e-57 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271200 [exp] 198 / 1e-56 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 198 / 1e-56 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050240 [exp] 198 / 2e-56 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 198 / 2e-56 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042307 [exp] 660 / 0 AT1G74900 549 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 207 / 3e-60 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 203 / 6e-58 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 192 / 8e-55 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 194 / 6e-54 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 192 / 2e-53 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039021 [exp] 189 / 2e-53 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 190 / 1e-52 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 190 / 1e-52 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 184 / 4e-52 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.015G070200.1 pacid=42776611 polypeptide=Potri.015G070200.1.p locus=Potri.015G070200 ID=Potri.015G070200.1.v4.1 annot-version=v4.1 ATGCAGACTCAAAAAATGCTCACTCAAAGAACTAACCGCTCCCTTTTACTCTATCTTCGTCCACCAAAATCGTACCCCTTCACCACCGCCACCCCCACTC CACCACCACCTCAACAACCACTTGAAGCCGCCGCTCTAGCCACCCTAATCCTCACGTCATCAAACCCACAAGCATTAGCCCAAACCCTTCACTCCCCCAC CATCCAATGGACCCCACAATTAGTCAACACAATCCTTAAACGCCTTTGGAACGATGGCCCAAAAGCCCTCCAATTCTTCAACCTCCTTTCCCACCATCCT TCCTACTCCCACCACCCCTCCTCCTACGACCACGCCATTGACATTTCCGCCCGCCTCCGCGACTCCCCTTCTCTCCGGTCCCTAGTTTATCGTATGCGCT CCGCCCGCCTTGGCCCTACCCCTAAAACCTTTGCAATCATTGCTGAAAGGTATGCCTCTGCGGGTAAACCCCATAGAGCTGTTAAAGTTTTCTTGTCTAT GCATCAATTTGGTTGTTTTCAAGACTTGCAATCTTTTAATACAATCCTTGATGTGTTATGCAAGTCCAAACGCGTGGAAATGGCTTATAATCTGTTTAAG GTTTTTAAGGGAAAGTTTAGGGCTGATTGTGTTAGTTATAATGTGATGGTGAATGGTTGGTGTTTGATTAAGAGGACTAATAAAGCTTTGGAGATGTTGA AAGAGATGGTTAAGAGAGGATTGACTCCGAATTTGACTAGTTATAATACAATGCTTAAAGGGTATTTTAGAGCTGGTCAGATTAATGAAGCTTGGGATTT CTTTTTGGAAATGAAGAAGAGAGACTGTGAAATTGATGTCATTACTTATACTACTGTGATTCATGGGTTTGGTGTTGCTGGTGAGATTAAGCGAGCTCGA AAGGTTTTTGATACGATGGTGAAGAAAGGAGTGCTTCCTTCCGTTGCTACTTATAATGCCTTCATTCAGGTTTTGTGTAAGAAAGACAACGTGGATAATG CTATAGTCATTTTTGAGGAGATGGTGGTGAAGGGTTATGTGCCAAATTCAATAACTTATAATTTGGTTATTAGAGGGCTGTGTCATAGAGGTGAAATGGA GCGGGCAATGGAATTTATGGGAAGAATGAGGGATGATGGTTGTGAGCCAAATGTTCAAACATACAATCTTGTGATTCGGTACTTTTGTGATGAAGGAGAG ATTGACAAAGCGCTGGACTTGTTCCAGAAGATGACTAGTGGGGATTGCTTGCCGAATTTGGACACTTACAATATATTGATAAGTGCAATGTTTGTTAGGA AAAAATCAGATGACTTATTGGTGGCTGGAAACTTGTTGATTGAGATGGTTGATAGAGGATTTGTTCCTCGGAAATTCACTTTCAATCGGGTTTTGAATGG GCTATTGTTAACAGGCAATCAAGGTTTTGCAAAGGAGATTCTGAGATTGCAGAGTAGATGTGGCCGTCTTACCCGTAAAATAAAGTTGTGA
AA sequence Show only first row Show all	>Potri.015G070200.1 pacid=42776611 polypeptide=Potri.015G070200.1.p locus=Potri.015G070200 ID=Potri.015G070200.1.v4.1 annot-version=v4.1 MQTQKMLTQRTNRSLLLYLRPPKSYPFTTATPTPPPPQQPLEAAALATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHP SYSHHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFK VFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVAGEIKRAR KVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMRDDGCEPNVQTYNLVIRYFCDEGE IDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTGNQGFAKEILRLQSRCGRLTRKIKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74900		OTP43	organelle transcript processin...		Potri.015G070200 [exp]	0	1
AT5G61800			Pentatricopeptide repeat (PPR)...		Potri.012G110800 [exp]	3.87	0.8845
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.008G014100 [exp]	7.21	0.8751
AT3G22430			unknown protein		Potri.008G152900 [exp]	7.21	0.8793
AT3G10670		ABCI6, ATNAP7	ATP-binding cassette I6, non-i...		Potri.010G245000 [exp]	7.34	0.8673
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	10.09	0.8769
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.013G152000 [exp]	11.22	0.8655
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.006G250900 [exp]	12.04	0.8688
AT4G39680			SAP domain-containing protein ...		Potri.005G080500 [exp]	13.41	0.8496
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	14.42	0.8475
AT3G63390			unknown protein		Potri.002G047400 [exp]	14.96	0.8628

Compare expression of checked genes

Potri.015G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.