Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48160 383 / 1e-131 E2F_DP E2FE, E2L3, DEL1 E2F-LIKE 3, DP-E2F-like 1 (.1.2) AT3G01330 325 / 2e-109 E2F_DP E2FF, E2L2, DEL3 E2F-LIKE 2, DP-E2F-like protein 3 (.1) AT5G14960 269 / 1e-87 E2F_DP DEL2, E2L1, E2FD DP-E2F-like 2 (.1) AT5G22220 64 / 4e-11 E2F_DP ATE2FB, E2F1 E2F transcription factor 1 (.2.3) AT2G36010 61 / 9e-10 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1.2.3) AT1G47870 57 / 6e-09 E2F_DP ATE2FC, ATE2F2, E2FC ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G075300 [exp] 689 / 0 AT3G48160 355 / 2e-120 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Potri.006G205100 [exp] 67 / 4e-12 AT2G36010 435 / 7e-150 E2F transcription factor 3 (.1.2.3) Potri.016G072300 [exp] 67 / 6e-12 AT2G36010 452 / 6e-157 E2F transcription factor 3 (.1.2.3) Potri.009G161900 [exp] 67 / 7e-12 AT5G22220 422 / 7e-145 E2F transcription factor 1 (.2.3) Potri.004G200800 [exp] 67 / 8e-12 AT5G22220 457 / 1e-158 E2F transcription factor 1 (.2.3) Potri.002G023400 [exp] 56 / 3e-08 AT1G47870 274 / 1e-88 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032439 [exp] 433 / 3e-151 AT3G48160 366 / 1e-124 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10042941 [exp] 417 / 3e-145 AT3G48160 371 / 1e-126 E2F-LIKE 3, DP-E2F-like 1 (.1.2) Lus10039455 [exp] 308 / 3e-100 AT3G01330 299 / 2e-97 E2F-LIKE 2, DP-E2F-like protein 3 (.1) Lus10005840 [exp] 205 / 4e-64 AT3G01330 202 / 8e-64 E2F-LIKE 2, DP-E2F-like protein 3 (.1) Lus10016972 [exp] 65 / 4e-11 AT2G36010 446 / 4e-154 E2F transcription factor 3 (.1.2.3) Lus10029421 [exp] 64 / 7e-11 AT2G36010 467 / 1e-161 E2F transcription factor 3 (.1.2.3) Lus10005209 [exp] 62 / 1e-10 AT5G22220 421 / 4e-146 E2F transcription factor 1 (.2.3) Lus10004217 [exp] 62 / 2e-10 AT2G36010 456 / 4e-158 E2F transcription factor 3 (.1.2.3) Lus10021298 [exp] 62 / 3e-10 AT2G36010 436 / 2e-149 E2F transcription factor 3 (.1.2.3) Lus10033151 [exp] 57 / 1e-08 AT1G47870 275 / 3e-89 ARABIDOPSIS THALIANA HOMOLOG OF E2F C, winged-helix DNA-binding transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF02319 [poplar] [flax] E2F_TDP E2F/DP family winged-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.015G070300.2 pacid=42775412 polypeptide=Potri.015G070300.2.p locus=Potri.015G070300 ID=Potri.015G070300.2.v4.1 annot-version=v4.1 ATGGCTTTGTCCTATACCGATATCATAGATCCCCCTTCAAGGCATCACGCTTATAGCAGAAAACAGAAATCTCTCGGTCTCTTATGCACCAATTTTTTGA CCCTGTATAATCGAGATGACATTGACGTGATTGGACTTGATGATGCAGCTTCTAAATTAGGAGTTGAGAGAAGACGGATCTATGATATAGTGAATGTCTT GGAGAGTGTTGGGGTTCTTGCAAGAAAGGCAAAGAATAAGTATTCATGGAAGGGATTTGCTTCAGTCCCTAAAGCTTTACAAGATTTGAAGGAAGAGGGT TTGAGAGATAATGTCAATACAATTGATAGGCAAAGCAATAATTCTGCGAAAGTTGCAAATGATGATGAGGACGAGGACGATGACTCTGATTCTAATCCTA ACACAGGAAGCCAGAATGAGAATTCTAGTATTATCAAATCTATGGCTGTGTCAAGATCTGATCATCGGAGAGAAAAGTCGTTGGGGCTTCTTACTCAGAA CTTCGTGAAGCTCTTTGTGTGCTCCAACGCAAATTTGATCTCACTCGATGAATCTGCCAAGTTATTACTAGGAGATGGCCACAATTTGTCAATTATGAGA ACGAAAGTAAGGAGGCTATATGACATTGCAAATGTGCTGTCTTCTCTGAAACTTATTGAGAAGACCCACACTGCTGATACAAGGAAACCTGCATTCAGGT GGTTAGGCTTCAGAGGCAAATCAGAGAACGGATCTGGTGATCCTTTGGCTCCTTTTGAGTCTAGGAAGAGGACATTTGGAGCTGATATCACAAACACATG TTTCAAAAGAAACAAAATGGATTCTTCAGTTGACGGGGATAAAAGCCAGAATCTGAAGATGCAGCAAATAAAAGATGAAAATATGGTAACTGTCGCCGAG AGAGGCAATTTTGGTCAGGATTTACAGCAGAAGTCGGGAAGTTTCCAGTTTGGCCCCTTTGCTCCTGTTAGCGTGGCCAAAGCGGGAAACCCTGAAGACA ATGTGACTCGAATCTATGATTGGGAGGGTCTTTCGTCTACTTTTCGTCCTCAATATCACAACCAAGCTCTGAGAGATCTCTTTTCCCATTACACGGAAGC ATGGAAATTATGGTACACTGAAGTTGCTGGGAAGAAACCATTACACATCTCCTAA
AA sequence Show only first row Show all	>Potri.015G070300.2 pacid=42775412 polypeptide=Potri.015G070300.2.p locus=Potri.015G070300 ID=Potri.015G070300.2.v4.1 annot-version=v4.1 MALSYTDIIDPPSRHHAYSRKQKSLGLLCTNFLTLYNRDDIDVIGLDDAASKLGVERRRIYDIVNVLESVGVLARKAKNKYSWKGFASVPKALQDLKEEG LRDNVNTIDRQSNNSAKVANDDEDEDDDSDSNPNTGSQNENSSIIKSMAVSRSDHRREKSLGLLTQNFVKLFVCSNANLISLDESAKLLLGDGHNLSIMR TKVRRLYDIANVLSSLKLIEKTHTADTRKPAFRWLGFRGKSENGSGDPLAPFESRKRTFGADITNTCFKRNKMDSSVDGDKSQNLKMQQIKDENMVTVAE RGNFGQDLQQKSGSFQFGPFAPVSVAKAGNPEDNVTRIYDWEGLSSTFRPQYHNQALRDLFSHYTEAWKLWYTEVAGKKPLHIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.015G070300 [exp]	0	1
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Potri.016G050300 [exp]	2.23	0.9407
AT2G36200			P-loop containing nucleoside t...		Potri.006G210700 [exp]	2.23	0.9202
AT5G43530			Helicase protein with RING/U-b...		Potri.003G083400 [exp]	2.82	0.9139
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Potri.012G075300 [exp]	3.00	0.9249	DEL2,DEL1.2
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Potri.015G057300 [exp]	4.00	0.9275
AT4G12540			unknown protein		Potri.013G040800 [exp]	9.16	0.9081
AT3G26400		EIF4B1	eukaryotic translation initiat...		Potri.014G123100 [exp]	10.81	0.9077
AT5G45700			Haloacid dehalogenase-like hyd...		Potri.011G072000 [exp]	10.81	0.9121
AT3G27330			zinc finger (C3HC4-type RING f...		Potri.001G336832 [exp]	11.48	0.9215
AT5G42700	B3		AP2/B3-like transcriptional fa...		Potri.014G031600 [exp]	14.69	0.8956

Compare expression of checked genes

Potri.015G070300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.