Plant FIBer expression Database

Potri.015G071100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.015G071100.2 pacid=42775542 polypeptide=Potri.015G071100.2.p locus=Potri.015G071100 ID=Potri.015G071100.2.v4.1 annot-version=v4.1
ATGAAAAGCAAGCACCATGGGTTTCGTGATAATTCTCTCCATATAGAGAGAGAGAGAGGGAGGGAGGGAGAAAGAGAAATTTCTCTGAGGAATTGGCACG
CAATATCTTGGATTTTTCTTCAACAATATAGCCCAACATCAATCATCATGCCCTCCTCCTCCTCTTCGCCCTTCTCACTTTCTCTTCACCACCATCATCA
TTACCCCCTCATCACCTCCACTACCTCATCCACCCACCACTCCTTTATCACTTACCATCAACTTCATATCCCAAAACCAAAACGAGGAAAGGCAGAAGAA
GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAAAGGGAAGGTTTTCTCTTCTGAGAAAAATAAACCAGCTGCCTTTTCACCTTGAAATCT
CTTTGTTATGA
AA sequence
>Potri.015G071100.2 pacid=42775542 polypeptide=Potri.015G071100.2.p locus=Potri.015G071100 ID=Potri.015G071100.2.v4.1 annot-version=v4.1
MKSKHHGFRDNSLHIERERGREGEREISLRNWHAISWIFLQQYSPTSIIMPSSSSSPFSLSLHHHHHYPLITSTTSSTHHSFITYHQLHIPKPKRGKAEE
EEEEEEEEEEEEEGKGRFSLLRKINQLPFHLEISLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.015G071100
[exp]
0 1
AT3G21760 HYR1 HYPOSTATIN RESISTANCE 1, UDP-G... Potri.016G015700
[exp]
3.87 0.8204
AT3G46130 MYB PFG3, ATMYB111 ... myb domain protein 48 (.1.2.3.... Potri.009G027300
[exp]
4.47 0.8417 MYB111.1,MYB023
AT4G16150 CAMTA calmodulin binding;transcripti... Potri.010G141700
[exp]
6.48 0.7739
AT2G02820 MYB ATMYB88 myb domain protein 88 (.1.2) Potri.008G148400
[exp]
8.71 0.7762 MYB124.1
AT1G78800 UDP-Glycosyltransferase superf... Potri.001G393000
[exp]
9.53 0.8077
AT4G27190 NB-ARC domain-containing disea... Potri.001G426200
[exp]
10.77 0.8188
AT3G04670 WRKY ATWRKY39, WRKY3... WRKY DNA-binding protein 39 (.... Potri.005G055300
[exp]
10.90 0.7814 WRKY39.1
AT4G24060 DOF AtDof4,6 Dof-type zinc finger DNA-bindi... Potri.001G086400
[exp]
11.00 0.7934 Pt-DOF4.2
AT4G18710 DWF12, UCU1, BI... ULTRACURVATA 1, DWARF 12, BRAS... Potri.004G059000
[exp]
14.31 0.7424 GSK1.2
AT3G53710 AGD6 ARF-GAP domain 6 (.1.2) Potri.016G095100
[exp]
14.42 0.7996

Potri.015G071100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.