Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65200 537 / 0 ATPUB38 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) AT5G62560 469 / 2e-160 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1) AT3G47820 447 / 1e-152 PUB39 PLANT U-BOX 39 (.1) AT5G40140 414 / 5e-139 RING/U-box superfamily protein with ARM repeat domain (.1) AT2G23140 136 / 1e-33 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G54850 119 / 3e-28 ATPUB14 plant U-box 14 (.1) AT2G28830 119 / 5e-28 AtPUB12 PLANT U-BOX 12 (.1) AT1G23030 114 / 1e-26 PUB11 ARM repeat superfamily protein (.1) AT3G46510 113 / 2e-26 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT5G67340 113 / 4e-26 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076400 [exp] 712 / 0 AT5G65200 469 / 2e-160 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.017G073400 [exp] 329 / 6e-108 AT5G40140 328 / 9e-108 RING/U-box superfamily protein with ARM repeat domain (.1) Potri.001G238500 [exp] 133 / 6e-33 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.009G029600 [exp] 132 / 2e-32 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.008G035700 [exp] 130 / 6e-32 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.005G144700 [exp] 129 / 2e-31 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.007G051000 [exp] 126 / 2e-30 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.010G226500 [exp] 124 / 6e-30 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.010G113900 [exp] 124 / 8e-30 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034119 [exp] 629 / 0 AT5G65200 562 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10043464 [exp] 628 / 0 AT5G65200 557 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Lus10039447 [exp] 349 / 2e-113 AT5G40140 434 / 1e-146 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10039470 [exp] 293 / 9e-92 AT5G40140 438 / 3e-148 RING/U-box superfamily protein with ARM repeat domain (.1) Lus10011514 [exp] 134 / 1e-32 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016016 [exp] 131 / 3e-32 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10012260 [exp] 131 / 5e-32 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10019308 [exp] 131 / 7e-32 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016565 [exp] 128 / 5e-31 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10040834 [exp] 126 / 2e-30 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.015G071200.1 pacid=42776237 polypeptide=Potri.015G071200.1.p locus=Potri.015G071200 ID=Potri.015G071200.1.v4.1 annot-version=v4.1 ATGGGTGGAAATGGGAAGCGCAGGTGGAAAATCTCCTTTTATTCTCGCTCAAAACCTACACAAACCCAACATCAACAACAACAACCTCCTAAAGAATTCA TTTGCCCCATTTCTGGATCCTTAATGTTTGACCCCGTTGTTGTCTCCTCTGGCCAAACCTTCGAGCGGCTCTCCGTCCAAGTTTGTCACGATTTAGGCTT TATCCCCACCCTCCAAGACAACTCCCTTCCTGATTTCACCAACGTAATCCCCAATTTAGCTATCAAAACAACGATTCAAAACTGGTGTGATTCTTCAGGC ACCCAACACCCTCCCGCACCGGATTACTCCTCCCTCGAGGAAATTATCCGTGAGAAAATGAAATTCTCGTCCCCTTCAGCATCATCGTTATCCAAGTCGA TGCAGTTAAGTCCAGATATTAGAGTTTCCGAGAGGGAGTTGCTCAAAGCAGTAGCTGAAAACCCTCCGGTTTTGTTTTCCCATGCCAACACTGAGTTGCC TCACCGAGTCGACCATTTCTACTCCAGCTCCTCCGAGGAATCTGTAATTGTCAACACAGCCGCCACTCCGTCAGCGAGTCCACTCACTCCTTTGCCTCTC GCGACTCGGCCAGCGTGTTATTCTTCCACTTCATCGTCGTCCAATTCGATTGCGGAATCCGAAACCCTAACCGTAACCGAAAATCCTAAATTGTCGCGTG AAGAAGATGAGATAGTGGAAAAGCTTAAGAGTCTTGATGTACGCGATCAAGAACAAGGTCTGATTTCGCTACGAAAGATCACGAGAACGAAAGAGGAAAC CAGAGTTTCACTTTGTACGCCTCGATTACTCTCTGCTCTTCGTACTTTATTTCCGTCACGATATTTTTCTGTCCAAACAAATGCCATTGCTTCACTTGTT AATTTGTCGTTAGAGAAAGTAAATAAGGTGAAAATTGTGCGGTCTGGTTTTATTCCTCTATTGATTGATGTGTTGAAAGGGGGATTTGATGAAGCGCAAG AGCACGCGGCTGGTGCTTTATTTAGTTTAGCTTTAGAGGATGAGAATAAAATGGCAATTGGTGTTTTAGGTGCGTTGCAGCCGTTGATGCACATGTTGAG GGCAGAGAGTGAGAGAGCTCGCCATGATTCCTCATTGGCCTTGTATCATTTGAGTTTAATACAGAGCAATCGGGTTAAGTTGGTGAAACTTGGGGCTGTT TCGATGTTGTTGAGTATGGTGAAATCGGGTGATCTGGCGAGTAGGTTGCTGCTTGTGTTGTGTAATTTGGCTGCTTGTAATGAAGGGAGGTCGGCCATGC TTGATGCTAATGCGGTGGCAATATTGGTGGGGATATTGAGGGAGGGTGGTGGAGGGGATTCAGAGGTGATTCGGGAGAATTGTGTGGCTGCATTGTTTGC GTTGAGTCATGGGAGTATGAGGTTTAAGGGATTGGCCAAGGAGGCAAGAGCTGTGGAGGTGTTGAGGGAGATTGAAGAGCGAGGGAGTAATAGAGCAAGA GAGAAAGCTAAGAGGATTTTGATGATGATGAGAGGGAGAGACGAGGAGGACGAGGACATTTGTTGGGAAGAGGTTTTGGAATCAGGTGGAATCAGTCGGA CTCGGTACCGAGCTGGTGGCAGAAATTTGCCTGGGCCAAACTCCACTAATTTTTGA
AA sequence Show only first row Show all	>Potri.015G071200.1 pacid=42776237 polypeptide=Potri.015G071200.1.p locus=Potri.015G071200 ID=Potri.015G071200.1.v4.1 annot-version=v4.1 MGGNGKRRWKISFYSRSKPTQTQHQQQQPPKEFICPISGSLMFDPVVVSSGQTFERLSVQVCHDLGFIPTLQDNSLPDFTNVIPNLAIKTTIQNWCDSSG TQHPPAPDYSSLEEIIREKMKFSSPSASSLSKSMQLSPDIRVSERELLKAVAENPPVLFSHANTELPHRVDHFYSSSSEESVIVNTAATPSASPLTPLPL ATRPACYSSTSSSSNSIAESETLTVTENPKLSREEDEIVEKLKSLDVRDQEQGLISLRKITRTKEETRVSLCTPRLLSALRTLFPSRYFSVQTNAIASLV NLSLEKVNKVKIVRSGFIPLLIDVLKGGFDEAQEHAAGALFSLALEDENKMAIGVLGALQPLMHMLRAESERARHDSSLALYHLSLIQSNRVKLVKLGAV SMLLSMVKSGDLASRLLLVLCNLAACNEGRSAMLDANAVAILVGILREGGGGDSEVIRENCVAALFALSHGSMRFKGLAKEARAVEVLREIEERGSNRAR EKAKRILMMMRGRDEEDEDICWEEVLESGGISRTRYRAGGRNLPGPNSTNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Potri.015G071200 [exp]	0	1
AT2G02160	C3HZnF		CCCH-type zinc finger family p...		Potri.008G144200 [exp]	4.24	0.8635
AT1G63850			BTB/POZ domain-containing prot...		Potri.004G154600 [exp]	8.30	0.8601
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Potri.003G210500 [exp]	13.56	0.8320
AT1G30460	C3HZnF	CPSF30, ATCPSF3...	ARABIDOPSIS THALIANA CLEAVAGE ...		Potri.011G089901 [exp]	17.49	0.8435
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	21.09	0.8510
AT5G57710			Double Clp-N motif-containing ...		Potri.018G097300 [exp]	26.83	0.7658
AT5G62640		AtELF5, ELF5	EARLY FLOWERING 5, proline-ric...		Potri.015G090200 [exp]	31.41	0.8404	ELF5.2
AT1G68930			pentatricopeptide (PPR) repeat...		Potri.008G113101 [exp]	35.70	0.7939
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.005G222900 [exp]	36.49	0.8320
AT5G52530			dentin sialophosphoprotein-rel...		Potri.004G079000 [exp]	37.68	0.7855

Compare expression of checked genes

Potri.015G071200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.