Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47830 343 / 1e-118 DNA glycosylase superfamily protein (.1) AT2G36490 76 / 4e-15 DML1, ROS1 REPRESSOR OF SILENCING1, demeter-like 1 (.1) AT3G10010 71 / 3e-13 DML2 demeter-like 2 (.1) AT5G04560 67 / 5e-12 DME1, DME DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) AT4G34060 62 / 2e-10 DML3 demeter-like protein 3 (.1.2) AT1G21710 50 / 1e-06 OGG1, ATOGG1 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) AT2G31450 46 / 2e-05 ATNTH1 DNA glycosylase superfamily protein (.1.2) AT1G05900 45 / 4e-05 ATNTH2 endonuclease III 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G116000 [exp] 77 / 2e-15 AT2G36490 729 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Potri.010G234400 [exp] 76 / 5e-15 AT5G04560 1026 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.001G150001 [exp] 74 / 3e-14 AT5G04560 560 / 2e-171 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.008G025900 [exp] 72 / 1e-13 AT5G04560 1030 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Potri.005G180700 [exp] 45 / 4e-05 AT1G21710 452 / 1e-159 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034120 [exp] 377 / 3e-131 AT3G47830 351 / 2e-121 DNA glycosylase superfamily protein (.1) Lus10043463 [exp] 273 / 1e-86 AT5G62570 306 / 1e-96 Calmodulin binding protein-like (.1.2) Lus10023864 [exp] 79 / 6e-16 AT5G04560 555 / 2e-170 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10014367 [exp] 76 / 8e-15 AT5G04560 540 / 1e-164 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10035576 [exp] 75 / 1e-14 AT2G36490 832 / 0.0 REPRESSOR OF SILENCING1, demeter-like 1 (.1) Lus10027713 [exp] 71 / 3e-13 AT5G04560 913 / 0.0 DEMETER, HhH-GPD base excision DNA repair family protein (.1.2) Lus10018137 [exp] 50 / 2e-06 AT1G21710 461 / 7e-162 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Lus10028539 [exp] 48 / 4e-06 AT1G21710 464 / 1e-163 ARABIDOPSIS 8-OXOGUANINE-DNA GLYCOSYLASE 1, 8-oxoguanine-DNA glycosylase 1 (.1) Lus10025575 [exp] 43 / 0.0002 AT2G31450 424 / 1e-147 DNA glycosylase superfamily protein (.1.2) Lus10027037 [exp] 42 / 0.0003 AT2G31450 416 / 3e-145 DNA glycosylase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0198 [poplar] [flax] HHH PF00730 [poplar] [flax] HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Representative CDS sequence Show only first row Show all	>Potri.015G071300.1 pacid=42776527 polypeptide=Potri.015G071300.1.p locus=Potri.015G071300 ID=Potri.015G071300.1.v4.1 annot-version=v4.1 ATGCAGACCGGACACAAAAGAAAGCAACAGCATGAGCTTAAACCTCGAACCAACAAAAAATCAGCCGAAACCATAAGCAACATTAAAGAAGAAGAGCCAT TTCCAACTCACGCTCGACCTACACCTGAAGAATGTAGAGCCATACGAGACTCTCTCTTGGCCTTCCACGGCTTTCCTCAAGAGTTTGCAAAGTATCGCAA ACAGAGACCCTATTTAATAACTCTACAAGACAAAGAAGAGTCCCCCCACTTAATCAACAATTGCGATGGAAAGAATGACAATGTGGTGAAAGTGGAAGAA GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGTGCTTTGGATGGTTTAGTGAAAACAGTGCTATCCCAGAATACTACAGAGGTTAATTCTCAAAGGGCTT TTCTTAATCTCAAGTCTGCCTTTCCAACTTGGGAAAATGTACTTGCTGCTGAATCAAAATTTATAGAGGATGCCATAAGATGTGGAGGTTTAGCTCCAAC AAAGGCTGCTTGCATTAGGAACATATTGAGTTCTTTGATGGAGAAAAAAGGAAGATTATGCTTGGAGTACCTTCGAGATTTGCCAGTTGCTGAAATTAAG GCTGAGCTCTCTCATTTCAAAGGAATTGGACCCAAGACAGTAGCTTGTGTTTTGATGTTCAACCTTCAGAAGGATGATTTCCCAGTGGACACGCATGTGT TTGAAATTGCAAAGGCCATTGGTTGGGTACCACCAGTGGCAGACCGCAATAAGACATATCTTCACCTCAATCATCGCATACCAAAGGAACTAAAATTTGA TCTGAATTGTCTTCTATATACACACGGTAAGCTTTGCCGTAAATGCACTAAGAAAAGTGGCAGCCAGCAAAGAAAGGAAACCCATGATGATTCCTGTCCT CTACTAAATTATTGTGTAAAATTATCATGA
AA sequence Show only first row Show all	>Potri.015G071300.1 pacid=42776527 polypeptide=Potri.015G071300.1.p locus=Potri.015G071300 ID=Potri.015G071300.1.v4.1 annot-version=v4.1 MQTGHKRKQQHELKPRTNKKSAETISNIKEEEPFPTHARPTPEECRAIRDSLLAFHGFPQEFAKYRKQRPYLITLQDKEESPHLINNCDGKNDNVVKVEE EEEEEEEEEESALDGLVKTVLSQNTTEVNSQRAFLNLKSAFPTWENVLAAESKFIEDAIRCGGLAPTKAACIRNILSSLMEKKGRLCLEYLRDLPVAEIK AELSHFKGIGPKTVACVLMFNLQKDDFPVDTHVFEIAKAIGWVPPVADRNKTYLHLNHRIPKELKFDLNCLLYTHGKLCRKCTKKSGSQQRKETHDDSCP LLNYCVKLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47830			DNA glycosylase superfamily pr...		Potri.015G071300 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	1.00	0.9410
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	2.82	0.9235
AT1G69420			DHHC-type zinc finger family p...		Potri.008G091700 [exp]	3.46	0.9260
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.004G172800 [exp]	5.00	0.9199	PtrAUX5
AT2G24960			unknown protein		Potri.004G172900 [exp]	5.47	0.9104
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	6.16	0.8967
AT1G32860			Glycosyl hydrolase superfamily...		Potri.011G152400 [exp]	7.21	0.9047
AT2G25270			unknown protein		Potri.006G258700 [exp]	7.34	0.9127
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Potri.016G121900 [exp]	7.74	0.9171
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.008G151800 [exp]	9.16	0.9152

Compare expression of checked genes

Potri.015G071300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.