Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27520 932 / 0 Glycosyl hydrolase family 47 protein (.1) AT5G43710 431 / 2e-144 Glycosyl hydrolase family 47 protein (.1) AT1G51590 204 / 2e-58 MNS1, MANIB ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) AT3G21160 192 / 9e-54 MNS2, MANIA ALPHA-MANNOSIDASE IA, alpha-mannosidase 2 (.1) AT1G30000 105 / 1e-23 MNS3 alpha-mannosidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G076600 [exp] 776 / 0 AT1G27520 657 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G160900 [exp] 422 / 5e-141 AT5G43710 908 / 0.0 Glycosyl hydrolase family 47 protein (.1) Potri.008G007500 [exp] 197 / 1e-55 AT1G51590 885 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.018G141100 [exp] 196 / 3e-55 AT1G51590 813 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Potri.004G132300 [exp] 106 / 5e-24 AT1G30000 934 / 0.0 alpha-mannosidase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042143 [exp] 943 / 0 AT1G27520 886 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10004233 [exp] 559 / 0 AT1G27520 515 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10041170 [exp] 421 / 4e-140 AT5G43710 885 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10021888 [exp] 406 / 4e-135 AT5G43710 853 / 0.0 Glycosyl hydrolase family 47 protein (.1) Lus10034820 [exp] 205 / 1e-58 AT1G51590 887 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10037312 [exp] 199 / 4e-56 AT1G51590 865 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10035727 [exp] 198 / 7e-56 AT1G51590 877 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10033368 [exp] 189 / 3e-52 AT1G51590 747 / 0.0 ALPHA-MANNOSIDASE IB, alpha-mannosidase 1 (.1.2) Lus10042830 [exp] 100 / 9e-22 AT1G30000 846 / 0.0 alpha-mannosidase 3 (.1) Lus10028127 [exp] 95 / 1e-20 AT1G30000 622 / 0.0 alpha-mannosidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF01532 [poplar] [flax] Glyco_hydro_47 Glycosyl hydrolase family 47
Representative CDS sequence Show only first row Show all	>Potri.015G071400.1 pacid=42776053 polypeptide=Potri.015G071400.1.p locus=Potri.015G071400 ID=Potri.015G071400.1.v4.1 annot-version=v4.1 ATGTTGGCTTGCAGATTTCGGACATGGGTTTTGTTGCTTCTTGTGATCTTTCCTAGTTTATTTGACCCTTCATTCTCCCACTTCGATTCAGCTAAGAAAA AGCAAATGCGAGAGAAAGTTCGAAAGATGTTCTACCATGCATATGAAAACTACATGACACACGCATTTCCGCATGATGAGCTCAAGCCTCTTAGCAGAAG TTTCACTGACTCACTCAGTGAGCTTGGAAATTTGAAGCTTGAGCACTTACCACAAAACTATAATGGGACTGCCCTTACACTCATTGAATCATTATCTAGC CTTGTTATTTTGGGTAACTACACTGAGTTTGAAAGGGCAGTTCTCTGGCTTTCTGAAAATCTAACATTTGATGTTGATGCAAGAGTAAACCTTTTTGAGT GCAACATAAGAGTCCTTGGAGGACTTGTTTCTGCTCATATTCTTGCAACTGACTCTACAAACAGGTTGGTTCAAGGATCTTACAAAAATCAGCTACTTGT TCTGGCTGAAGATTTAGGACGACGCTTCCTACCTGCATTTGATACTCCTACTGGATTGCCATATGCCTGGATTAACTTGAAGTATGGAGTCATGAAGAAT GAGACTACTGAAACAAGCACTTCAGGATGTGGTTCTCTTATTCTTGAAATGGGAGCCTTGTCACGATTAACTGGTGATCCTAGATATGAGTCTGCAGCCT TGCGTGCTCTACGAAAGTTATGGAGTATGCGTAGTTCTCTAAATTTGTTAGGAACGACACTGGATGTGGAAACTGGGGAATGGATTGAACATTCATCTGG GATCGGTGCTGGAGTTGATTCATTCTATGAGTATCTATTCAAGGCTCACATTCTTTTCGGGAAGGAGGACTTCTGGAGAATGTTTCATTCTGCTTATCTT GCAGTACAGAAATATTTCAGACATGGCCCATGGTACCATGAAGCTGATATGAGGACTGGAAAAGCAACATATTGGCAACTGACAAGCCTTCAAGCATTCT GGCCTGGCCTACAGGTTCTTGTTGGGGATATTGCAGCTGCCAACTCATCACACCGTGAATTTGTTCATGTGTGGAAGAAGTTTGGGGTGTTACCAGAAAG GTATTTGCTGGACCATCAAATGTTACACCCTACAGAAAAGTACTATCCACTGCGCCCTGAATTAGCAGAGTCAACATTCTACCTGTATCAAGCAACTAAA GATCCATGGTACATAGAAGTGGGTGAAACAATTGTTAATTCTCTTAATTCATACACCAAAGTGGAAGGAGGATTTGCAAGCATTAGAGATGTCACAACCA TGCAAACAGAAGATCATATGCATAGCTTCTTCCTTGCTGAAACGTGCAAGTATTTATATCTTCTCTTTGATGATTCATTTTTGGTTGATCGGAATTATAT ATTCACTACTGAGGGTCACCCTTTGCCTGTGCTAAGTGCTTGGCACGAGAGACTGCCAGAGATATACATCCCATCAAACTGGACTTATGTCAAGAATGAA AGGCAAACAAAACGATCAAGTGCAATGTCTCTGCAAGTCTGTCCTGCATTGAGTTTGAATGCAGGACATGGTGAACAACAGGTTGAGAGCGCTTGCCATG TCCCTGATGATCAAAGTGATCACAAGTGTTTCAGTGATGAAGAGTGTGGAGTTGACTCGACTAGCTGTAGACGAAGATCATGTAGCATGGCTGGTTACTG TGGGCTATGGTTGGTCGCATGA
AA sequence Show only first row Show all	>Potri.015G071400.1 pacid=42776053 polypeptide=Potri.015G071400.1.p locus=Potri.015G071400 ID=Potri.015G071400.1.v4.1 annot-version=v4.1 MLACRFRTWVLLLLVIFPSLFDPSFSHFDSAKKKQMREKVRKMFYHAYENYMTHAFPHDELKPLSRSFTDSLSELGNLKLEHLPQNYNGTALTLIESLSS LVILGNYTEFERAVLWLSENLTFDVDARVNLFECNIRVLGGLVSAHILATDSTNRLVQGSYKNQLLVLAEDLGRRFLPAFDTPTGLPYAWINLKYGVMKN ETTETSTSGCGSLILEMGALSRLTGDPRYESAALRALRKLWSMRSSLNLLGTTLDVETGEWIEHSSGIGAGVDSFYEYLFKAHILFGKEDFWRMFHSAYL AVQKYFRHGPWYHEADMRTGKATYWQLTSLQAFWPGLQVLVGDIAAANSSHREFVHVWKKFGVLPERYLLDHQMLHPTEKYYPLRPELAESTFYLYQATK DPWYIEVGETIVNSLNSYTKVEGGFASIRDVTTMQTEDHMHSFFLAETCKYLYLLFDDSFLVDRNYIFTTEGHPLPVLSAWHERLPEIYIPSNWTYVKNE RQTKRSSAMSLQVCPALSLNAGHGEQQVESACHVPDDQSDHKCFSDEECGVDSTSCRRRSCSMAGYCGLWLVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27520			Glycosyl hydrolase family 47 p...		Potri.015G071400 [exp]	0	1
AT2G32415			Polynucleotidyl transferase, r...		Potri.002G229000 [exp]	10.39	0.7598
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Potri.002G139200 [exp]	11.61	0.8090
AT5G10790		UBP22	ubiquitin-specific protease 22...		Potri.006G266100 [exp]	15.87	0.7682
AT5G28350			Quinoprotein amine dehydrogena...		Potri.014G087900 [exp]	15.93	0.8188
AT1G50730			unknown protein		Potri.001G356700 [exp]	16.12	0.7753
AT5G07630			lipid transporters (.1)		Potri.001G126200 [exp]	18.00	0.8100
AT5G40640			unknown protein		Potri.001G338900 [exp]	19.18	0.7906
AT5G12370		SEC10	exocyst complex component sec1...		Potri.002G164100 [exp]	21.67	0.7852
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.018G065900 [exp]	22.31	0.8017
AT5G19280	FHA	RAG1, KAPP	ROOT ATTENUATED GROWTH 1, kina...		Potri.010G091500 [exp]	24.81	0.7795	Pt-KAPP.2

Compare expression of checked genes

Potri.015G071400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.