Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24100 427 / 5e-147 UGT74B1 UDP-glucosyl transferase 74B1 (.1) AT2G43840 412 / 2e-141 UGT74F1 UDP-glycosyltransferase 74 F1 (.1.2) AT2G43820 407 / 3e-139 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) AT1G05680 400 / 8e-137 UGT74E2 Uridine diphosphate glycosyltransferase 74E2 (.1) AT1G05675 400 / 9e-137 UDP-Glycosyltransferase superfamily protein (.1) AT2G31750 379 / 5e-128 UGT74D1 UDP-glucosyl transferase 74D1 (.1) AT2G31790 360 / 1e-120 UDP-Glycosyltransferase superfamily protein (.1) AT1G05560 271 / 7e-86 UGT75B1, UGT1 UDP-GLUCOSE TRANSFERASE 1, UDP-glucosyltransferase 75B1 (.1) AT1G05530 270 / 1e-85 UGT75B2, UGT2 UDP-GLUCOSYL TRANSFERASE 2, UDP-glucosyl transferase 75B2 (.1) AT4G15480 262 / 3e-82 UGT84A1 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G140500 [exp] 443 / 2e-153 AT2G43840 463 / 3e-161 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032300 [exp] 429 / 8e-148 AT1G05675 465 / 6e-162 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G175000 [exp] 428 / 2e-147 AT2G43840 411 / 8e-141 UDP-glycosyltransferase 74 F1 (.1.2) Potri.001G389200 [exp] 421 / 2e-144 AT1G05680 494 / 2e-173 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G117200 [exp] 413 / 1e-141 AT2G43840 461 / 1e-160 UDP-glycosyltransferase 74 F1 (.1.2) Potri.017G032733 [exp] 410 / 1e-140 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032700 [exp] 410 / 1e-140 AT1G05680 444 / 6e-154 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.007G140300 [exp] 410 / 2e-140 AT1G05680 457 / 4e-159 Uridine diphosphate glycosyltransferase 74E2 (.1) Potri.017G032500 [exp] 410 / 2e-140 AT1G05680 446 / 1e-154 Uridine diphosphate glycosyltransferase 74E2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010712 [exp] 494 / 3e-173 AT1G24100 462 / 1e-160 UDP-glucosyl transferase 74B1 (.1) Lus10008742 [exp] 446 / 2e-154 AT2G43840 478 / 6e-167 UDP-glycosyltransferase 74 F1 (.1.2) Lus10020556 [exp] 416 / 1e-142 AT2G43820 472 / 1e-164 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10014148 [exp] 415 / 2e-142 AT2G43840 407 / 2e-139 UDP-glycosyltransferase 74 F1 (.1.2) Lus10009412 [exp] 405 / 1e-138 AT2G43820 474 / 1e-165 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006352 [exp] 395 / 3e-134 AT2G43820 414 / 6e-142 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10006353 [exp] 395 / 4e-134 AT2G43820 398 / 1e-135 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10020559 [exp] 387 / 3e-131 AT2G43820 436 / 3e-150 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1) Lus10017825 [exp] 374 / 6e-126 AT2G43840 392 / 2e-133 UDP-glycosyltransferase 74 F1 (.1.2) Lus10024486 [exp] 372 / 2e-125 AT1G05680 389 / 4e-132 Uridine diphosphate glycosyltransferase 74E2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00201 [poplar] [flax] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Potri.015G071900.1 pacid=42776532 polypeptide=Potri.015G071900.1.p locus=Potri.015G071900 ID=Potri.015G071900.1.v4.1 annot-version=v4.1 ATGGACAATAAAAAAAGTCATGTCATTGTTCTTACTTATCCAGCTCAAGGCCACATCAACCCCCTCCTTCAGTTTGCTAAGCGCTTGGCTTCCAAAGGGC TCAAGGCCACTCTTGCCACCACTTATTACACTGTCAACTCAATAGATGCACCCACAGTAGGCGTTGAACCCATCTCTGATGGCTTTGATGAAGGTGGCTT CAAGCAAGCATCAAGTTTGGATGTCTACTTAGAGTCATTCAAAACTGTTGGTTCACGAACTTTGACTGAACTCGTATTTAAGTTCAAAGCCTCAGGTTCA CCTGTTAACTGTGTTGTGTATGATTCCATGCTGCCTTGGGCTCTTGATGTGGCTAGAGACTTAGGCATATATGCTGCCGCGTTCATGACCACCTCAGCTT CTGTCTGCTCCATGTATTGGCGAATTGATCTTGGCCTCTTGAGTTTGCCTTTGAAGCAACAAACAGCGACCGTGTCCCTGCCTGGCCTTCCTCCGCTAGG CTGCTGCGATTTGCCAAGCTTTCTGGCAGAACCAACAAGTCAGACTGCTTATTTGGAAGTAATCATGGAGAAATTTCACAGTTTAAATGAAGATGACTGG GTGTTCTGCAATTCCTTTGAAGATCTGGAGATTGAGTTAGTAAAGGCCATGCGAGGAAAGTGGCCACTGGTGATGGTCGGTCCGATGGTGCCATCTGCCT ACCTTGACCAACAAATTGATGGGGATAGAGCTTATGGGGCTAGTCTTTGGAAGCCAACAAGCAGTCAGTGTTTCACATGGCTGGACACAAAACCACCAAG GTCAGTGATATATGTGTCTTTCGGAAGCATGGGAAACATTTCAGCTGAACAGGTTGAAGAAATCGCATGGGGTTTGAAAGCAAGCAACAGGCCCTTCCTA TGGGTCATGAAGGAATCAGAAAAAAAGTTGCCAACTGGGTTTCTAAACTCGGTAGGTGAGACAGGTATGGTTGTATCATGGTGCAATCAACTGGAGGTGC TAGCTCACCAAGCTATCGGTTGCTTTGTTACTCATTGTGGATGGAATTCAACGTTAGAGGGGTTAGGCCTAGGTGTGCCAATGGTATGCGTGACAGAGAG GAGTGACCAGCCAATGAATGCCAAGTTTGTGGAGGATGTATGGAAGGTGGGAGTGAGAGCTAAGAAAGATGAAGTGGGTATCGTAACAAGAGAGGAGCTT GAGAAGTGCATAAGAGGAGTCATGGACGGAGAGAATGGTGAAGAAATTAAGAGGAATGCTAACAAATGGAGAGAGCTTGCAAGGAGCGCTGTTAGTGTAG GTGGGAGTTCTGATATGAATATCAATGAATTTGTAGTGAAGTTACTGGAAGGGAAGAAAGGATAA
AA sequence Show only first row Show all	>Potri.015G071900.1 pacid=42776532 polypeptide=Potri.015G071900.1.p locus=Potri.015G071900 ID=Potri.015G071900.1.v4.1 annot-version=v4.1 MDNKKSHVIVLTYPAQGHINPLLQFAKRLASKGLKATLATTYYTVNSIDAPTVGVEPISDGFDEGGFKQASSLDVYLESFKTVGSRTLTELVFKFKASGS PVNCVVYDSMLPWALDVARDLGIYAAAFMTTSASVCSMYWRIDLGLLSLPLKQQTATVSLPGLPPLGCCDLPSFLAEPTSQTAYLEVIMEKFHSLNEDDW VFCNSFEDLEIELVKAMRGKWPLVMVGPMVPSAYLDQQIDGDRAYGASLWKPTSSQCFTWLDTKPPRSVIYVSFGSMGNISAEQVEEIAWGLKASNRPFL WVMKESEKKLPTGFLNSVGETGMVVSWCNQLEVLAHQAIGCFVTHCGWNSTLEGLGLGVPMVCVTERSDQPMNAKFVEDVWKVGVRAKKDEVGIVTREEL EKCIRGVMDGENGEEIKRNANKWRELARSAVSVGGSSDMNINEFVVKLLEGKKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G24100		UGT74B1	UDP-glucosyl transferase 74B1 ...		Potri.015G071900 [exp]	0	1
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Potri.008G107200 [exp]	1.00	0.7505
AT4G12070			unknown protein		Potri.001G017000 [exp]	4.58	0.6865
AT2G41380			S-adenosyl-L-methionine-depend...		Potri.016G039051 [exp]	15.74	0.6844
AT4G15920		SWEET17, AtSWEE...	Nodulin MtN3 family protein (....		Potri.013G014400 [exp]	17.94	0.6570
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.009G048700 [exp]	18.73	0.6397	Pt-SCL3.1
AT2G30600			BTB/POZ domain-containing prot...		Potri.002G010100 [exp]	19.44	0.6241
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Potri.013G041600 [exp]	21.90	0.6579	Pt-PR4.1
AT5G45310			unknown protein		Potri.004G234300 [exp]	24.24	0.6053
AT2G27310			F-box family protein (.1)		Potri.005G208200 [exp]	25.09	0.6261
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Potri.006G176800 [exp]	36.60	0.6214

Compare expression of checked genes

Potri.015G071900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.