Plant FIBer expression Database

Potri.015G072000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50100 261 / 3e-89 Putative thiol-disulphide oxidoreductase DCC (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042142
[exp]
263 / 4e-89 AT5G50100 237 / 9e-79 Putative thiol-disulphide oxidoreductase DCC (.1)
Lus10004232
[exp]
261 / 3e-88 AT5G50100 239 / 9e-80 Putative thiol-disulphide oxidoreductase DCC (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04134 DUF393 Protein of unknown function, DUF393
Representative CDS sequence
>Potri.015G072000.2 pacid=42775511 polypeptide=Potri.015G072000.2.p locus=Potri.015G072000 ID=Potri.015G072000.2.v4.1 annot-version=v4.1
ATGGCTATGGCATTGACAAGAGCATCGTGCTGTTCTCTTGCAAGACAAAGAAACCCCCTCCGTTCTATTTTCCTTCGAAACCCTCATCATCAACGCATCA
GATTTCGTCATCCTCTCCAAAGCTTCAAATCGTATCCAGCTGGATTTCAACATCGAGTTCGGGCAATACATGAGGCAACCGTCGAGCCTTTAACTAGCAA
CAAACAAAATGAGCCTCAGCCTCAGAATTGGAACATTAAAATGCTTTACGATGGAGATTGCCCTCTTTGCATGCGTGAGGTTAATATGCTAAGAGAGAGG
AATGAAAGCTATGGCACCATAAAGTTTGTTGACATAAGCTCAGATGAGTACTCACCGGAGGAGAATCAAGGCCTGGACTACAAAACTGTTATGGGAAGAA
TCCATGCAATCCTTTCTGATGGAACTGTGGTCACGGATGTTGAAGCATTCCGAAAGTTATATGAAGAAGTTGGTCTTGGATGGGTTTATGCTGTTACCAA
ATATGAACCTATTGCTACAATAGCTGATGCTATATATAGTGTTTGGGCTAAATATCGTCTGCAAGTTACAGGCCGACCACCTTTGGAGGAAATCTTGGAC
ACTCGAAAGAAGAAGGATGAAATATGCAATAACAGCAATGCTTGTAAGATGTGA
AA sequence
>Potri.015G072000.2 pacid=42775511 polypeptide=Potri.015G072000.2.p locus=Potri.015G072000 ID=Potri.015G072000.2.v4.1 annot-version=v4.1
MAMALTRASCCSLARQRNPLRSIFLRNPHHQRIRFRHPLQSFKSYPAGFQHRVRAIHEATVEPLTSNKQNEPQPQNWNIKMLYDGDCPLCMREVNMLRER
NESYGTIKFVDISSDEYSPEENQGLDYKTVMGRIHAILSDGTVVTDVEAFRKLYEEVGLGWVYAVTKYEPIATIADAIYSVWAKYRLQVTGRPPLEEILD
TRKKKDEICNNSNACKM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G50100 Putative thiol-disulphide oxid... Potri.015G072000
[exp]
0 1
AT5G22830 MRS2-11, GMN10,... MAGNESIUM TRANSPORTER 10, magn... Potri.009G151400
[exp]
3.87 0.9477 ATMGT10.1
AT1G22850 SNARE associated Golgi protein... Potri.013G099600
[exp]
4.12 0.9562
AT3G24190 Protein kinase superfamily pro... Potri.001G050700
[exp]
4.47 0.9483
AT1G50020 unknown protein Potri.001G289400
[exp]
4.47 0.9444
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Potri.005G249200
[exp]
5.29 0.9302 Pt-FTSH2.1
AT5G38660 APE1 acclimation of photosynthesis ... Potri.004G102100
[exp]
8.94 0.9358
AT5G01410 PDX1, ATPDX1.3,... REDUCED SUGAR RESPONSE 4, ARAB... Potri.016G116400
[exp]
13.56 0.9252 Pt-PDX1.2
AT5G47240 ATNUDT8 nudix hydrolase homolog 8 (.1) Potri.018G069100
[exp]
20.00 0.9060
AT5G19850 alpha/beta-Hydrolases superfam... Potri.003G219700
[exp]
20.78 0.9244
AT5G06720 ATPA2 peroxidase 2 (.1) Potri.001G011500
[exp]
23.23 0.9130 PRX1.12

Potri.015G072000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.