Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50090 151 / 4e-47 unknown protein AT5G62900 139 / 4e-42 unknown protein AT1G60010 138 / 8e-42 unknown protein AT1G10530 123 / 6e-36 unknown protein AT5G67620 104 / 2e-28 unknown protein AT1G29195 40 / 0.0003 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G077300 [exp] 293 / 2e-102 AT5G50090 168 / 1e-53 unknown protein Potri.010G095400 [exp] 152 / 6e-47 AT1G60010 187 / 5e-61 unknown protein Potri.008G146500 [exp] 146 / 3e-44 AT1G60010 189 / 3e-61 unknown protein Potri.007G005600 [exp] 123 / 1e-35 AT5G67620 184 / 7e-60 unknown protein Potri.006G213100 [exp] 40 / 0.0002 AT3G10120 122 / 9e-36 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034124 [exp] 177 / 2e-56 AT5G50090 147 / 3e-45 unknown protein Lus10004229 [exp] 171 / 2e-54 AT5G50090 150 / 1e-46 unknown protein Lus10043461 [exp] 169 / 1e-53 AT5G50090 146 / 7e-45 unknown protein Lus10042139 [exp] 161 / 2e-50 AT5G50090 141 / 4e-43 unknown protein Lus10029193 [exp] 151 / 1e-46 AT1G60010 178 / 1e-57 unknown protein Lus10010708 [exp] 150 / 2e-46 AT1G60010 177 / 3e-57 unknown protein Lus10030651 [exp] 142 / 3e-43 AT1G60010 171 / 4e-55 unknown protein Lus10030835 [exp] 132 / 1e-39 AT1G60010 150 / 2e-47 unknown protein Lus10019264 [exp] 100 / 3e-26 AT5G67620 163 / 5e-51 unknown protein Lus10011549 [exp] 46 / 6e-06 AT5G67620 90 / 1e-20 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14009 [poplar] [flax] DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence Show only first row Show all	>Potri.015G072501.1 pacid=42776318 polypeptide=Potri.015G072501.1.p locus=Potri.015G072501 ID=Potri.015G072501.1.v4.1 annot-version=v4.1 ATGGGGAATTGTCAAGCCATTGACGCTGCAACTCTAGTGATTCAACATCCAAATGGAAAAATAGAAAACTTTTATTGGCCTGTGAGTGCTAGTGAGGTCA TGAAGACGAACCCTGGTCACTACGTTGCTCTTCTTCTCTCCACCACCTTGTATGATCCAACCAATAACAATGGGGAATGTCCCAACAACGGCACCGCTAA CAATAATTCTCTGAGAGTAACGAGGATTAAGCTTCTCAGGCCTACTGATACTCTTGTTCTTGGCCATGTTTATAGACTCATCACCACTCAAGAGGTTACG AAAGGGTTATGGGCAAAGAAACAAGCAAAGCTGAAGAAAAACGATCCAGAATCAGAAGAGAAACCTGAGAGGGTGAAAGAGAAGCAGGGATCAGGAGTGG ATACAAGAGCAAGAAGATCTGAACAAGAGAAGAAAAATCAGGTGACCGTTAAAAAAGAAAGAAACAGACCAAGGGCAACAACATCAGCTAACTCTGCTGC CATAGCCAGATCAAGAGCATGGCAACCCTCACTCCGTAGCATTTTAGAGGCTGGCAGCGGCAGCTAA
AA sequence Show only first row Show all	>Potri.015G072501.1 pacid=42776318 polypeptide=Potri.015G072501.1.p locus=Potri.015G072501 ID=Potri.015G072501.1.v4.1 annot-version=v4.1 MGNCQAIDAATLVIQHPNGKIENFYWPVSASEVMKTNPGHYVALLLSTTLYDPTNNNGECPNNGTANNNSLRVTRIKLLRPTDTLVLGHVYRLITTQEVT KGLWAKKQAKLKKNDPESEEKPERVKEKQGSGVDTRARRSEQEKKNQVTVKKERNRPRATTSANSAAIARSRAWQPSLRSILEAGSGS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G50090			unknown protein		Potri.015G072501 [exp]	0	1
AT5G53280		PDV1	plastid division1 (.1)		Potri.012G032200 [exp]	13.60	0.6762
AT1G05810		ARA, Ara-1, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.002G249500 [exp]	14.56	0.6817	RAB11.3
AT1G14720		ATXTH28, EXGT-A...	xyloglucan endotransglycosylas...		Potri.008G138400 [exp]	17.20	0.6529	EXGT.4
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.013G020300 [exp]	19.13	0.6608	ATS9.2
AT4G37660			Ribosomal protein L12/ ATP-dep...		Potri.004G224300 [exp]	24.43	0.6895
AT5G64130			cAMP-regulated phosphoprotein ...		Potri.004G111900 [exp]	26.15	0.6403
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	29.56	0.6098
AT4G05150			Octicosapeptide/Phox/Bem1p fam...		Potri.011G041100 [exp]	32.03	0.5534
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Potri.010G253200 [exp]	44.27	0.6142	DWF5.2
AT4G32390			Nucleotide-sugar transporter f...		Potri.006G252500 [exp]	45.09	0.6509

Compare expression of checked genes

Potri.015G072501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.