Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48050 1345 / 0 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 1300 / 0 BAH domain ;TFIIS helical bundle-like domain (.1) AT4G11560 108 / 6e-24 bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 75 / 1e-13 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 72 / 7e-13 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 62 / 2e-09 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G24200 59 / 3e-08 Transcription elongation factor (TFIIS) family protein (.1) AT5G09850 48 / 4e-05 Transcription elongation factor (TFIIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072900 [exp] 2492 / 0 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077700 [exp] 2373 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 2199 / 0 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.001G104300 [exp] 108 / 8e-24 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127400 [exp] 100 / 2e-21 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.002G020000 [exp] 71 / 6e-12 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.003G127300 [exp] 62 / 4e-10 AT4G11560 207 / 3e-64 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.005G241400 [exp] 64 / 8e-10 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033410 [exp] 1434 / 0 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 971 / 0 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10008492 [exp] 103 / 3e-22 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 103 / 4e-22 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10017630 [exp] 78 / 6e-14 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10009128 [exp] 77 / 1e-13 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 76 / 3e-13 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 74 / 8e-13 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10020020 [exp] 47 / 5e-05 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 46 / 9e-05 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.015G072800.6 pacid=42775500 polypeptide=Potri.015G072800.6.p locus=Potri.015G072800 ID=Potri.015G072800.6.v4.1 annot-version=v4.1 ATGCTGCATGGAAGGGAAGGTGAGGAGAGGAAAAAGGATCATCGGCACATGTGGACAGGTCCCACACGTGGTAATTCTGCTGTAGCTGGTGATGATGTTT CTAATTCGTTTTTCAAGGATGGACGCAAGATCAGTGTTGGAGACTGTGCTTTGTTCAAACCACCCCAGGACTCCCCGCCATTCATTGGAATAATTCGTTG GCTGACTAACGGTAAAGAGAACAAGTTAAAGTTAGGTGTAAATTGGCTTTATCGACCTGCTGAAGTAAAGCTTGGCAAAGGCATCCTATTGGAAGCTGTG CCAAACGAAATATTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCATTACTCCATCCGTGTAAAGTTGCGTTCCTTCCCAAAGGTGTTGAACTTC CATCAGGGATTTGCTCATTTGTGTGCCGGCGAGTTTATGACGTTACGAACAAGTGTTTATGGTGGCTAACTGATCAGGATTATATTAATGAACGTCAAGA GGAAGTAGATCACTTATTGGATAAGACACGCTTAGAAATGCATGCAACAGTGCAACCAGGTGGACGCTCTCCAAAGCCAGTGAATGGACCAACATCAACA TCTCAGTTAAAACCTGTTTCAGATAGTGTACAGAATAGTGTTTCATCCTTTTCTTCTTATGGTAAGGGAAAGAAAAGAGAAAGGGGCGATCAGGGCTCTG AGCCTGTGAAACGAGAGCGCTTTACAAAAATGGATGATGGGGATTCTGGCCATAGTAGACCAGAAAGCATGTGGAAATCTGAGGTTTCTAAATTTACAGA AAAAGGAGGACTTGTGGATTCTGAAGGGGTTGAGAAATTGGTGCATATAATGCTCCCTGAGAGAAATGAGAAAAAAATAGACTTGGTTGGTCGGTCAATT CTCGCTGGTGTGGTAGCAGCCACTGATAAGTTTGAATGCCTAAATCAGTTTGTGCAGCTTAGAGGCTTGCCGGTGTTTGATGAATGGCTGCAGGAGGTCC ATAAAGGGAAGATTGGTGATGGTAGCCCCAAGGATGGTGATAAATCAGTTGAGGAATTTCTGGTAGTTTTACTTCGGGCACTCGATAAGCTCCCTGTAAA TCTTCATGCTCTGCAAATGTGTAATATTGGCAAATCTGTGAATCTTCTGCGCACCCATAAGAACTTGGAAATACAGAAGAAAGCGAGGAGCTTAGTTGAC ACATGGAAGAAACGTGTTGAGGCGGAAATGGATGCAAATGCAAAGTCTGCCTCTAACCAAGGTGTCTCATGGCCTGCTAGATCACGTCTTTCTGAAGTTC CTCATGGTGGGAACAGACAATCTGGTGTATCCTCTGAGGTTGCAATGAAGAGCTCAGTTGTGCAACTCTCTGCTTCGAAAACTGGTTCGGTCAAGGCTGT ACAGGGGGATACTGTTACCAAGTCCGCATCAACATCCCCTGGACCTGTAAGATCGACAACTTCACCTGGATCAGTGGGTAATAACTCAAAGGAAACACAA CCCCGAAACACTGGTGCGAGTGCTGCCTCCGATCCATCTCCAACAGTAGCAAGGGATGAGAAAAGCAGCAGTTCTAGCCCGTCCCACAACAATAGTCAAT CCTGTTCCAGTGACCATGCCAAAACTGGGGGGTTTTCTGGAAAGGAGGATGCAAGGAGCTCGACTGCTGGTTCAATGACGGCAAATAAGATCATTGTTGG TTCTTTGCGGCATCGTAAATCAGTCAATGGCTTTCCAGGCCAAGCTCTATCTGGTGTCCAAAAGGAAACTGGGTCGAGCAGAAATTCTTCTTTGCACAGA AATTCAGGTTCAGAAAAATTGTCACATTCCAGTTTGACATGTGAGAAGGCACTTGATGTTCCCATGACAGAGGGGAATGGCCATAAATTTATTGTTAAAA TTCCCAACAGAGGTCGCAGTCCGGCACAAAGTTCCAGTGGAGGAACTTTCGAAGACGCATCAGTCATGAATAGCAGAGCTTCTTCTCCTGTGATTTCGGA GAGGCATGACCAGTTTGATCATAATTTGAAGGAAAAAAATGATTCATATCGAGCTAACATTACATCTGATGTTAAGACTGAGTCGTGGCAAAGCAATGAT TTCAAAGAGGTGCTTACCGGATCAGATGAGGGAGTTGGGTCGCCTGCCACTGTTCCTGATGAAGAGCATGGTCGGATAGGTGATGATGGTAGAAAATCAG GTGAAGTCTCAAAAGCTACACCTACTTCAACTGTGTGTGAACATAAATTGGGGAAGTTGAATGATGCTTCTTTCAGCTCCATGAATGCTTTGATTGAAAG TTGTGCAAAGTACTCTGAAGGAAATGCATCATTGTCAGTTGGTGATGATGGTGGTATGAATCTCCTTGCTAGTGTAGCTGCTGGGGAGATGTCCAAGTCT GATATGGTTTCACCGACAGGTTCTCCAAGGAGAAACATGCCTATCGAGCATCCCTGTGTGCCAAGTGGTTTGAGAGCAAAATCCTCTCCATGTGATGATC CTGCTCAAAGCCAAGGTAAGCCTGTTGATGGTGTTGATTATGAAGATGAGAAGCGGGGTATTACTGTTGGTACTTCACTGTCCAAGAACACAGAGGCTAA AACAGTTTTGTTTTCGCAAGAAAAAAGCACAGGGGAGCTCAATGGACCTCCTAATTCTTCCCATGTGGATGTGCAGCAAACTGCCAAACCATGCCTAGAA AGCTATTTGAAATCAGAGGAAACATTAGTAGCTGCTGTGTCCTCTGCTAGCACAGCAGTGAAAACATCAAATTGTGGGGGCAAAGAACCGTGGGAGAAAG AGGATGGTGGCAGATCAAATGTAGATGGCATATCTGATGACAAAGAAAAGTTGCATGGTTCTGTCTTTAATGATATCAACAATACAGGAGTGCAAGTTGC GATTGAAGCAATGGAAGGATCATCATCAAACCATCGTGTAGAGTTTGATGCTGAGAACAAGAAAAATATAAATAAAGAGCTGAACATTTCTATTAAGGCA GAGCCAGCACCACCTGCTATTATGCTGTCTGATTTTGCAAAAGGAACAATTAATGAAGTGCTCCAACCTTCTAGTTCTGGTAAGGATATGGATTCTGAAA ACTTGCATGAGGTGAAGGCTGGTGAAACAGATGGCAGGAGTCATTCTACAGAGAAAAATAAAATTGAAAATGAAAGTAATACAGCATCAGCTGCCACTGA TCATGAAGGTGAGTGCAAAGTGGAGAGCCTGGGAGGTAATCAGGTCGATGAGCAATGTAGTACCGGACCAGCTGCCCACAAGGCAGCACCCATACTTTTT CAGGCACCAGAACAAATAGTAAGGTCAACAGAGTCGAAGTTTGCTGGCACTGGAACTGATGAAACTGAGGAATGTACATCTGATGCTGCTGAGGCTTCTT CTTTATCTGCTGCAGGGGGATCGGATCTGGAAGCAAAAGTTGAATTTGATCTGAATGAAGGCTTTATTTCTGATGATGGGAAATATGGGGAGTCGAGTGA CTTGAGAGCACCTGGATGCTCTTCTGCGATTCAGCTAGTTAGCCCTTTGCCCTTACCTGTTTCTTCTGTGTCTAGTGGGCTTCCTGCTTCCATTACAGTA GCTGCCGCTGCAAAAGGGCCCTTTGTTCCACCAGAGGATTTACTTAAGAGTAGACGGGAGCTTGGTTGGAAGGGATCGGCAGCCACAAGTGCATTTCGGC CAGCTGAACCTAGAAAAGCTTTGGAGATTCCATTAGGTACAGCTAATATCTCACTACCTGATGCAATGGTTTCCAAGCCTGGTCGCCCCCTGTTAGATAT TGACTTGAATGTTCCTGATGAAAGAATCCTTGAGGATTTGGCTTCACGAAGTTCTGCTCAGGAGGCAGTTTCTGTTTCTGACCTTGCAAAGAACAATGAT TGTGCACGTGATGCACTGATGGGTTCAATATCTGTTCGAAGCTCTGGGGGACTTGATCTTGATTTGAATAGAGCAGATGAAGCTAGTGATATTGGTAATC ACTTAACAAGCATTGGCCGGAGGCTGGATGCCCCACTACATCCCGCCAAATCATCTGGTGGTTTTCTAAACGGAAAGGTTGGTGGTTGCTGGGACTTTGA TTTGAATGATGGCCCTCTTGTCGATGAGGTGAGTGCCGAACCATCACAACTTGGGCGGCATACCCAAAACATTGTGCCATCCCAACCATCCATTTCTAGC CTTCGAATGAACAGTACAGAAATGGGAAACTTCCCCTCCTGGTTTCCTCAAGGGAATCCGTATCCTGCTGTCACAATCCAATCTATCTTGCATGATAGAG GAGAGCAGCCTTTCCCTATAGTTGCAACTGGTGGGCCTCAACGGATCTTGGCTTCCTCTACTGGCAGCAACCCATTTAATCCTGATGTCTACAGGGGAGC AGTGTTGTCGTCCTCTCCAGCAGTGCCATTTCCATCTACTCCTTTTCAGTATCCTGTCTTTCCTTTTGGGACCAGCTTCCCTCTTCCCTCAGCTACATTT TCAGGTGGTTCAGCATCGTATGTGGATTCATCATCTGGTGGGAGGCTTTGCTTTCCCACAGTACCTTCTCAAGTAGTAGCGCAAGTTGGTGTGGTCTCAT CCCATTATCCAAGGCCTTATGCTGTTAACCTCCCAGACAGTAACAATAATGGTGCTGTGGAGAGCAGTAGGAAATGGGTAAGGCAGGGTCTAGATCTCAA TGCCGGGCCTCTAGGTGCAGATATTGAAGGTAGAAATGAGACCTCAGCTCTTGCATCGAGGCAGCTGTCTGTTGCCAGTTCACAAGCCCATGCAGAGGAG CTATCGAGGATGTATCAGGCGACTAGTGGAGGTTTTCTTAAGAGGAAGGAACCAGAGGGTGGATGGGATGGTTATAAGCAATCCTCCTGGCAGAAGGGAT GA
AA sequence Show only first row Show all	>Potri.015G072800.6 pacid=42775500 polypeptide=Potri.015G072800.6.p locus=Potri.015G072800 ID=Potri.015G072800.6.v4.1 annot-version=v4.1 MLHGREGEERKKDHRHMWTGPTRGNSAVAGDDVSNSFFKDGRKISVGDCALFKPPQDSPPFIGIIRWLTNGKENKLKLGVNWLYRPAEVKLGKGILLEAV PNEIFYSFHKDEIPAASLLHPCKVAFLPKGVELPSGICSFVCRRVYDVTNKCLWWLTDQDYINERQEEVDHLLDKTRLEMHATVQPGGRSPKPVNGPTST SQLKPVSDSVQNSVSSFSSYGKGKKRERGDQGSEPVKRERFTKMDDGDSGHSRPESMWKSEVSKFTEKGGLVDSEGVEKLVHIMLPERNEKKIDLVGRSI LAGVVAATDKFECLNQFVQLRGLPVFDEWLQEVHKGKIGDGSPKDGDKSVEEFLVVLLRALDKLPVNLHALQMCNIGKSVNLLRTHKNLEIQKKARSLVD TWKKRVEAEMDANAKSASNQGVSWPARSRLSEVPHGGNRQSGVSSEVAMKSSVVQLSASKTGSVKAVQGDTVTKSASTSPGPVRSTTSPGSVGNNSKETQ PRNTGASAASDPSPTVARDEKSSSSSPSHNNSQSCSSDHAKTGGFSGKEDARSSTAGSMTANKIIVGSLRHRKSVNGFPGQALSGVQKETGSSRNSSLHR NSGSEKLSHSSLTCEKALDVPMTEGNGHKFIVKIPNRGRSPAQSSSGGTFEDASVMNSRASSPVISERHDQFDHNLKEKNDSYRANITSDVKTESWQSND FKEVLTGSDEGVGSPATVPDEEHGRIGDDGRKSGEVSKATPTSTVCEHKLGKLNDASFSSMNALIESCAKYSEGNASLSVGDDGGMNLLASVAAGEMSKS DMVSPTGSPRRNMPIEHPCVPSGLRAKSSPCDDPAQSQGKPVDGVDYEDEKRGITVGTSLSKNTEAKTVLFSQEKSTGELNGPPNSSHVDVQQTAKPCLE SYLKSEETLVAAVSSASTAVKTSNCGGKEPWEKEDGGRSNVDGISDDKEKLHGSVFNDINNTGVQVAIEAMEGSSSNHRVEFDAENKKNINKELNISIKA EPAPPAIMLSDFAKGTINEVLQPSSSGKDMDSENLHEVKAGETDGRSHSTEKNKIENESNTASAATDHEGECKVESLGGNQVDEQCSTGPAAHKAAPILF QAPEQIVRSTESKFAGTGTDETEECTSDAAEASSLSAAGGSDLEAKVEFDLNEGFISDDGKYGESSDLRAPGCSSAIQLVSPLPLPVSSVSSGLPASITV AAAAKGPFVPPEDLLKSRRELGWKGSAATSAFRPAEPRKALEIPLGTANISLPDAMVSKPGRPLLDIDLNVPDERILEDLASRSSAQEAVSVSDLAKNND CARDALMGSISVRSSGGLDLDLNRADEASDIGNHLTSIGRRLDAPLHPAKSSGGFLNGKVGGCWDFDLNDGPLVDEVSAEPSQLGRHTQNIVPSQPSISS LRMNSTEMGNFPSWFPQGNPYPAVTIQSILHDRGEQPFPIVATGGPQRILASSTGSNPFNPDVYRGAVLSSSPAVPFPSTPFQYPVFPFGTSFPLPSATF SGGSASYVDSSSGGRLCFPTVPSQVVAQVGVVSSHYPRPYAVNLPDSNNNGAVESSRKWVRQGLDLNAGPLGADIEGRNETSALASRQLSVASSQAHAEE LSRMYQATSGGFLKRKEPEGGWDGYKQSSWQKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	0	1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077500 [exp]	1.41	0.9013
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	1.41	0.8925
AT4G24200			Transcription elongation facto...		Potri.002G020000 [exp]	4.24	0.8632
AT2G35050			Protein kinase superfamily pro...		Potri.001G123500 [exp]	8.36	0.8614
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077700 [exp]	10.72	0.8718
AT3G52250	MYB		Duplicated homeodomain-like su...		Potri.008G041900 [exp]	11.22	0.8754
AT1G22860			Vacuolar sorting protein 39 (....		Potri.001G081900 [exp]	15.58	0.8591
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.009G016900 [exp]	15.65	0.8029
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.005G235400 [exp]	15.74	0.8739
AT3G45830			unknown protein		Potri.001G233800 [exp]	21.74	0.8549

Compare expression of checked genes

Potri.015G072800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.