Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48050 1311 / 0 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 1262 / 0 BAH domain ;TFIIS helical bundle-like domain (.1) AT4G11560 100 / 2e-21 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G25120 82 / 9e-16 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 69 / 1e-11 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G43990 65 / 2e-10 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G24200 63 / 2e-09 Transcription elongation factor (TFIIS) family protein (.1) AT5G09850 47 / 0.0001 Transcription elongation factor (TFIIS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G072800 [exp] 2560 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077700 [exp] 2529 / 0 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 2083 / 0 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.001G104300 [exp] 102 / 7e-22 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127400 [exp] 98 / 2e-20 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.002G020000 [exp] 70 / 1e-11 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.003G127300 [exp] 62 / 2e-10 AT4G11560 207 / 3e-64 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.005G241400 [exp] 61 / 1e-08 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.002G226000 [exp] 44 / 0.0006 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033410 [exp] 1424 / 0 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 932 / 0 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Lus10008492 [exp] 98 / 2e-20 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 98 / 3e-20 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10009128 [exp] 75 / 4e-13 AT4G24200 193 / 2e-50 Transcription elongation factor (TFIIS) family protein (.1) Lus10028515 [exp] 74 / 7e-13 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10017630 [exp] 73 / 1e-12 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 69 / 4e-11 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10020020 [exp] 46 / 0.0001 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10015543 [exp] 45 / 0.0003 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08711 [poplar] [flax] Med26 TFIIS helical bundle-like domain
Representative CDS sequence Show only first row Show all	>Potri.015G072900.2 pacid=42776017 polypeptide=Potri.015G072900.2.p locus=Potri.015G072900 ID=Potri.015G072900.2.v4.1 annot-version=v4.1 ATGCTGCATGGGCGGGAAGCTGAGGAGGAGAGGAAAAAGGATCATATTCGGCACATGTGGACTGCTCCCACTCGTGTTAACAACAATTCAGTTGTAGCTG CTCCTGATTTCGTCCCTTCTCCTCCTTCTTCTTCTTCGTTATCTTCAGCTGATTCTTTTTACAAGGATGGACGCAAGGTCAGTGTTGGAGACTCTGCTCT GTTCAAACCACCCCAGGACTCCCCTCCTTTCATTGGAATAATCCAAAGGCTGACTACTGATAAAGAGAACAAGTTAAAGTTAGGTGTGAATTGGCTTTAT CGACCTGCTGACATAAAGCTTGGCAAAGGCATCCTACTGGAAGCTGCGCCAAACGAAGTATTCTTTTCCTTTCACAAGGATGAAATTCCTGCTGCATCAC TACTCCATCCGTGTAAAGTTGCCTTCCTTCCGAAAGGTGTTGAACTTCCATCAGGGATTTGCTCATTTGTGTGCCGGCGAGTTTATGACATTACAAACAA GTGTTTATGGTGGCTAACTGATCAGGATTATATTAATGAACGACAAGAAGTAGTGGATCAGCTATTATCCAAGACACGTTTAGAAATGCATGCAACAGTT CAACCAGATGGATGTTCTCCGAAGACAATGAATGGTCCAACTTCAACATCACAGGTAAAACCTAGTTCTGATAGTGTACAGAATAATGCTGCCTCCTTTC CTTCACAATCTAAGGGCAAGAAAAGGGAGCGTGGAGATCAGGGGTCTGAGCCCATTAAACGAGAACGTTTTTCTAAAATGGATGATGTGGATTCTGTTCA TAGACCAGAAAGCATTTGGAAATCTGAGATTTCTAAATTTACAGAGAAGGGGGGACTTGTGGATTCTGAAGGGGTTGAGAAATTGGTGCATCTCATGCTA CCTGAGAGGAACGAGAGGAAAGTAGATTTGGTTGGCCGGTCAATGCTAGCTGGTGTGATAGCAGCCACAGATAAGTTTGATTGCTTAAATCGGTTTGTGC AGCTGAGGGGCTTGCCTGTATTTGATGAATGGCTACAGGAGGTGCATAAAGGGAAGATTGGTGATGGTAGTAGCCCCAAGGATAGTGATAGATCTGTTGA GGATTTTTTATTAGTTTTGCTTCATGCACTGGATAAACTCCCTATAAATCTTCATGCTCTGCAAATGTGTAATATTGGCAAATCTGTGAATCATTTGCGG ACACATAAGAATTTGGAAATACAGAAGAAAGCAAGGAGTTTAGTTGACATGTGGAAGAAACGGGTTGAGGCTGAAATGGATGCAAATGCAAAGTTTAGTT CTAACCAAGGTGTCACCTGGTCTACTAGATCGCGCATTCCTGAAGTTTCGCAGGTTGGGAATAGACCATCTGGTGTATCCTCAGAGATTGCAATGAAGAG CTCAGTTGTGCAACTCTCTGCTTCGAAAAGTGGTCCAGTCAAGCTTGTCCAGGGGGAGACTGTGACCAAGTCTGCATCATCTCCAGGCCCCATAAAATCA ACAGCATCACCTGGCACAGTTGGTAATAATTTGAAAGATGGACAGCTCAGAAATATTGGTGTCAGTGGCGCCTCAGATCTACCTGCATCTGCAGCAAAGG ATGAGAAAAGCAGCAGTTCCAGTCAGTCCCTCAACAATAGTCAATCTTGTTCTAGTGACCATGCCAAAACTTCAGGATTGCCGGGAAAGGAGGATGCAAG GAGCTCTACTGCTGTTTCAATGGCAACAAATAAGATCATTGGTGGTTCTTTGCGGCAACGTAAATCAGTTAATGGGTTTCCAGGCCCAGCTGTATCTGGG GTCCAAAGGGATAGTGGATCGAGCAGAAGTTCTCCCTTGCACAGAAATCCAGGTTCAGAGAAATTACAACAGTCCAGTTTGGCATGCGATCAGGCACTTG ATGTTCCAACGGCTGAAGGGTTCAGTCATAAATTCATTGTTAAAATTCCCACCAAAGGTCGCAGTCCTGCACAAAGTTCCAGTGGGGGAACTTTGGAAGA CACTTCAGTCATGAATAGCAGAGATTCTTCTCCTGTGCCTTCGGAGAGGCATGACCAGTTTGATCATAATTTGAAGGAAAAAATTAATTCATATCGAGTT AATATTGCATCAGATGTTAAGACCGAGTCGTGGCAAAGCAATGATTTCAAAGAGGTGCTGACTGGGTCAGATGAGGGTGATGGGTCGCCTGCCACTGTTC CTGATGAAGAGCATGGTTGTATGGGTGATGATGCTAGTAAATTAGGTGAAGTCTCAAAAGCTACACCCTCTTCAAATGTGTATGAACATAAATTTGGGAA GCTGCATGATGCATCTTTCAGCTCCATGAATGCTTTGATTGAAAGTTGTGCAAAATACTCTGATGGGAATGCATCTATGTCAGTTGGTGATGATGTTGGT ATGAATCTGCTTGCTAGTGTAGCTGCCGGGGAGATGTCCAAGTCTGATATGGTTTCACCAACAGATTCTCCACGGAGAAACATGCCTATCGAGCACCCCT GTGCACCAAGTGGTTCGAGAGCAAAATCATCACCACGTGATGTTCCTGCTCAAAGCCAAGGTAAGCCTGTTGATGATGAAGATGAGAAGCAGGGTATTAC TGTTGGTACTTCACTGTCCAAGAACATAGGGGCTAAAACAGTTCTGTTTTCACAAGAAAAACACACAGGGGAGCTCAATGGACCTCCCAATTCTTCCCAT GTGGATGGGAAGAAAATTGCTGAACCATGCCTAGAAAGCAATGTGAAATCAGAGGAAATACTATTAGCTGCTGTGTCCTCTGAAAGCATGGCAGTGAAAA CATCAAATTGTAGGGGCAAGGAGCTGTGGGAGAAAGAGGGTGGTGGCAGATCAAATTTAGATGGCATATCTGATGAAAAAGAAAAGTTGCATGGTTCTGT CTTAAATGAGATCAACAATACAGGAGTGCAAGATGGGACTGATGCAATTGATGTATCATCAACAAACCATCCTGTAGAGACTGATGGTGAGAACAAGAAA AAAATGAATAAAGAGCTGGATGTTTCTGTTGGGGATGAGCCAAAACCACCTGCTATGTTGCAGTCTGATTTTGCAAAAGGAACCAATGATGAAGTGCGCG AACCTTCTAGTTCTGGCAAGGATGTGGTTTCTGAAAACATGCATGATGTGAAGGCTGGTGAAACAGATGGTAGGAGTCATTCTACTGAGAAAAATAAAAT TGAACATGAATGTAATACAGCCTCAGCCACAACTGATTATGAAGGTGAGTGCAAGGTGGAGAGCTTGGGAGGCATTCAGGTCAATGAGCAATGTAGTGCC AGACCAGCTGCTCACAAGGCAGCACCCACACTTGTTCAGGCACCAGAACTAGTAGTGTCAACAAGGTCAAATTTGGCTGGCACTGGAGCTGATGAAACAG AGGAATGTATGTCTGCCCCTGCTGCTGCTTCTTCTTTATCTGCTACAGGGGGATCGGATCTGGAAGCAAAAGTTGAATTTGATCTGAATGAAGGCTTTAT TTCTGATGATGGGAAATATGGGGAGTCAGGTGATTTGAGAACACCTGGATGCTCTTCTGCGATTCAGCTAATTAGCCCTTTTCCCTTACCTGTTTCTTCT GTGTCTAGTGGGCTTCCTGCTTCCATTACAGTAGCCGCTGCTGCAAAAGGGTCCTTTGTTCCACCAGAGGATCTACTGAAGAGTAGACGGGAGCTTGGTT GGAAGGGATCGGCAGCCACAAGTGCATTTCGGCCAGCTGAACCTAGAAAAGCTTTGGAGATTCCATTAGTTACAGCTAATATCTCACTACCTGATGCAAT GGTTTCCAAGCCTGGTCGCCCCCTGTTAGATATTGACTTGAATGTTCCTGATGAAAGAATCCTCGAGGATTTGGCTTCACGAAGTTCTGCTCAGGAGACA GTTTCTGTTTCTGACCTTGCAAAGAATAATGATTGTGCACGTGATGCACTGATGGGTTCGATACCTGTTCGAAGCTCGGGGGGACTTGATTTTGATTTGA ATAGAGCAGATGAAGCTAGTGATATTGGTAATCACTTAACAAGCATTGGCCGGAGGCTGGATGCCCCACTTCATCCCGCCAAATCATCTGGTGGTTTTCT AAATGGAAAGGTTGGTGGTTGCAGAGACTTTGATTTGAATGATGGCCCTCTTGTTGATGAGGTGAGTGCTGAACCATCACCACTTGGCCAGCATACCCGA AACATTGTGCCATCTCAACCACTCATTTCTAACCTTCGGATGAACAGTACGGAAATTGGAAACTTCCCCTCCTGGTTTCCTCAAGGAAATCCTTATCCTG CTGTCACAATCCAATCTATCTTGCATGATAGAGGAGAGCAGCCTTTCCCAGTAGTTGCAACTGGTGGGCCTCAGAGGATGTTGGCTTCCTCTACTGGCAG CAATCCATTTAATACTGATGTCTACAGGGGAGCAGTGTTGTCGTCTTCTCCGGCAGTGCCATTTCCATCTCCTCCTTTCCAGTATCCTGTCTTTCCTTTT GGGACCAACTTTCCTCTTACCTCAGCAACATTTTCTGGTGGTTCAGCATCGTATGTGGATTCACCATCTGGTGGGAGACTTTGCTTTCCGACAGTACCCT CTCAAGTATTAGGTGCAGTCTCGTCTCATTATCCAAGGCCTTCTTATGCTGTTAACTTCCCAGACAGTAACAATAACAATAATGGTGCTGTGGAGAGCAG TAGGAAATGGGGAAGACAGGGTCTAGATCTCAATGCTGGGCCTTTAGGCCCAGACATGGAAAGTAGAGATGAGACCTCAGCTCTTGCATCGAGGCAACTA TCTGTTGCCAGTTCACAGGTCCTTACAGAGGAGCAATCGAGGATGTATCAAGTGACCAGCGGAGGTGTTTTGAAGCGGAAGGAGCCAGAGGGTGGATGGG AAGGTTATAAGCAATCCTCATGGCAGTAG
AA sequence Show only first row Show all	>Potri.015G072900.2 pacid=42776017 polypeptide=Potri.015G072900.2.p locus=Potri.015G072900 ID=Potri.015G072900.2.v4.1 annot-version=v4.1 MLHGREAEEERKKDHIRHMWTAPTRVNNNSVVAAPDFVPSPPSSSSLSSADSFYKDGRKVSVGDSALFKPPQDSPPFIGIIQRLTTDKENKLKLGVNWLY RPADIKLGKGILLEAAPNEVFFSFHKDEIPAASLLHPCKVAFLPKGVELPSGICSFVCRRVYDITNKCLWWLTDQDYINERQEVVDQLLSKTRLEMHATV QPDGCSPKTMNGPTSTSQVKPSSDSVQNNAASFPSQSKGKKRERGDQGSEPIKRERFSKMDDVDSVHRPESIWKSEISKFTEKGGLVDSEGVEKLVHLML PERNERKVDLVGRSMLAGVIAATDKFDCLNRFVQLRGLPVFDEWLQEVHKGKIGDGSSPKDSDRSVEDFLLVLLHALDKLPINLHALQMCNIGKSVNHLR THKNLEIQKKARSLVDMWKKRVEAEMDANAKFSSNQGVTWSTRSRIPEVSQVGNRPSGVSSEIAMKSSVVQLSASKSGPVKLVQGETVTKSASSPGPIKS TASPGTVGNNLKDGQLRNIGVSGASDLPASAAKDEKSSSSSQSLNNSQSCSSDHAKTSGLPGKEDARSSTAVSMATNKIIGGSLRQRKSVNGFPGPAVSG VQRDSGSSRSSPLHRNPGSEKLQQSSLACDQALDVPTAEGFSHKFIVKIPTKGRSPAQSSSGGTLEDTSVMNSRDSSPVPSERHDQFDHNLKEKINSYRV NIASDVKTESWQSNDFKEVLTGSDEGDGSPATVPDEEHGCMGDDASKLGEVSKATPSSNVYEHKFGKLHDASFSSMNALIESCAKYSDGNASMSVGDDVG MNLLASVAAGEMSKSDMVSPTDSPRRNMPIEHPCAPSGSRAKSSPRDVPAQSQGKPVDDEDEKQGITVGTSLSKNIGAKTVLFSQEKHTGELNGPPNSSH VDGKKIAEPCLESNVKSEEILLAAVSSESMAVKTSNCRGKELWEKEGGGRSNLDGISDEKEKLHGSVLNEINNTGVQDGTDAIDVSSTNHPVETDGENKK KMNKELDVSVGDEPKPPAMLQSDFAKGTNDEVREPSSSGKDVVSENMHDVKAGETDGRSHSTEKNKIEHECNTASATTDYEGECKVESLGGIQVNEQCSA RPAAHKAAPTLVQAPELVVSTRSNLAGTGADETEECMSAPAAASSLSATGGSDLEAKVEFDLNEGFISDDGKYGESGDLRTPGCSSAIQLISPFPLPVSS VSSGLPASITVAAAAKGSFVPPEDLLKSRRELGWKGSAATSAFRPAEPRKALEIPLVTANISLPDAMVSKPGRPLLDIDLNVPDERILEDLASRSSAQET VSVSDLAKNNDCARDALMGSIPVRSSGGLDFDLNRADEASDIGNHLTSIGRRLDAPLHPAKSSGGFLNGKVGGCRDFDLNDGPLVDEVSAEPSPLGQHTR NIVPSQPLISNLRMNSTEIGNFPSWFPQGNPYPAVTIQSILHDRGEQPFPVVATGGPQRMLASSTGSNPFNTDVYRGAVLSSSPAVPFPSPPFQYPVFPF GTNFPLTSATFSGGSASYVDSPSGGRLCFPTVPSQVLGAVSSHYPRPSYAVNFPDSNNNNNGAVESSRKWGRQGLDLNAGPLGPDMESRDETSALASRQL SVASSQVLTEEQSRMYQVTSGGVLKRKEPEGGWEGYKQSSWQ

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Potri.014G132900 [exp]	1.41	0.8878
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072800 [exp]	1.41	0.8925
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	4.89	0.8767
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.012G077500 [exp]	5.91	0.8766
AT2G46020		CHA2, ATBRM, CH...	CHROMATIN REMODELING 2, ARABID...		Potri.002G160900 [exp]	6.00	0.8845
AT5G03280		CKR1, PIR2, ORE...	ORESARA 3, ORESARA 2, ENHANCED...		Potri.006G127100 [exp]	6.92	0.8500
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	8.94	0.8671
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	10.19	0.8485
AT2G06210		VIP6, ELF8	VERNALIZATION INDEPENDENCE 6, ...		Potri.006G143300 [exp]	11.22	0.8561	PAFC901
AT1G22860			Vacuolar sorting protein 39 (....		Potri.003G148700 [exp]	11.83	0.8007

Compare expression of checked genes

Potri.015G072900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.