Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40240 255 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G40230 251 / 6e-81 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28050 248 / 8e-80 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G70260 241 / 8e-77 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G60050 207 / 5e-64 Nodulin MtN21 /EamA-like transporter family protein (.1) AT4G15540 205 / 2e-63 EamA-like transporter family (.1) AT5G40210 204 / 6e-63 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G28130 204 / 7e-63 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G18200 199 / 5e-61 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G30420 199 / 1e-60 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G145800 [exp] 311 / 1e-104 AT3G28050 283 / 2e-93 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032100 [exp] 280 / 4e-92 AT3G28050 224 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.010G096100 [exp] 273 / 2e-89 AT1G70260 415 / 4e-145 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G337100 [exp] 268 / 9e-88 AT3G28050 367 / 4e-126 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192900 [exp] 252 / 3e-81 AT3G28050 222 / 1e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 209 / 3e-64 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.002G029100 [exp] 208 / 5e-64 AT1G75500 578 / 0.0 Walls Are Thin 1 (.1.2) Potri.010G209200 [exp] 207 / 1e-63 AT2G39510 503 / 3e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G051500 [exp] 204 / 2e-62 AT2G39510 472 / 4e-167 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034877 [exp] 354 / 7e-122 AT5G40230 207 / 3e-64 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10010695 [exp] 300 / 3e-100 AT3G28050 280 / 3e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039481 [exp] 288 / 1e-95 AT5G40240 265 / 2e-86 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10039425 [exp] 276 / 2e-90 AT3G28050 453 / 4e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039479 [exp] 269 / 1e-87 AT3G28050 457 / 1e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10029180 [exp] 236 / 2e-75 AT3G28050 220 / 2e-69 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039478 [exp] 233 / 1e-73 AT3G28050 385 / 2e-133 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039429 [exp] 230 / 7e-72 AT3G28050 354 / 6e-120 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039430 [exp] 223 / 1e-70 AT3G28050 315 / 8e-107 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10039428 [exp] 221 / 1e-69 AT3G28050 343 / 2e-117 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.015G073200.1 pacid=42775185 polypeptide=Potri.015G073200.1.p locus=Potri.015G073200 ID=Potri.015G073200.1.v4.1 annot-version=v4.1 ATGGGAGTAAAGTCTGTCTTGTTAAATTTGCTGCCATTTGCAGCCATGGTGATGGTGGAATGCCTTGATGTTGGTTTGACCACACTGAGCAAAGCAGCCA TGTCCAAAGGGATGAGCCAATTTGTCTTTGTTGTTTACTCTAATGCTCTTGCCACTCTTATCTTGTTACCTTCTTTAATCTTCTACAGAACAAAGAGACC ACCAGTCACCTACTCCCTCCTCTGCAAGTTCTTCCTCCTTAGCCTTGTTGGGATTACTTTGATGCAGAATTGTGTGTTCACTGGTGTAAGCTACAGTTCT CCTACCCTTGCTTCTGCTATGGGCCAACTAATCCCTGCCTTCACTTTCTTGCTTGCTGTTATCTTCAGGATGGAAAAGCTAGATTGGAGAAGCTCAAGAA GTCGGATCAAAATCATGGGCACACTGGTATCAGTTTCAGGAGCTTTGACTATAACCTTGTACAAGGGCCCTGCAATAGGTGCCATAACTACCCAATCAAA TCCTGATCCAATCCCTTCCATCATGTCAACAGCAAATTCTTGGATCATAGGAGGCCTCTTCCTTGTAACTGCTGATTTATGCGTTTCAATATTTACTACT CTTCAGGCAGCAATTTTAAAAGAGTACCCTTCAGAGATGGCCATGGTCTCCTTCCTCTGCCTCTTTGGGACGATTCAAAGTTCAATAGTTTCCTTGATTG CAGAGCGGAATCCAAATGCTTGGAAACTGAGGCCTGATATTGAGCTCATCTCCATCATCTATTCAGCTGTGGTTGGCAGTGTGGTGACGTTTGGTGTAAC AGCATGGTGCATACGCAAGAAGGGGCCTGTTTTTGTGGCCATTTTTAAACCTGTGGGGATTGCTACTGCTGCGTTTCTGGGTGTTATCTTTCTTGGCGAC ACACTTCATGTTGGAAGTATTGTTGGAGCAATTATAATTGTTGCCGGTTTCTATGGAGTGATTTGGGCACAATCCAAAGAGGACGAACATAGTAAAGTAA ACAGACCCAGAAACCTACAATCACTGTCACAGAAGACTCCTCTCTTGGAGAGCCATATGAACGCCTAA
AA sequence Show only first row Show all	>Potri.015G073200.1 pacid=42775185 polypeptide=Potri.015G073200.1.p locus=Potri.015G073200 ID=Potri.015G073200.1.v4.1 annot-version=v4.1 MGVKSVLLNLLPFAAMVMVECLDVGLTTLSKAAMSKGMSQFVFVVYSNALATLILLPSLIFYRTKRPPVTYSLLCKFFLLSLVGITLMQNCVFTGVSYSS PTLASAMGQLIPAFTFLLAVIFRMEKLDWRSSRSRIKIMGTLVSVSGALTITLYKGPAIGAITTQSNPDPIPSIMSTANSWIIGGLFLVTADLCVSIFTT LQAAILKEYPSEMAMVSFLCLFGTIQSSIVSLIAERNPNAWKLRPDIELISIIYSAVVGSVVTFGVTAWCIRKKGPVFVAIFKPVGIATAAFLGVIFLGD TLHVGSIVGAIIIVAGFYGVIWAQSKEDEHSKVNRPRNLQSLSQKTPLLESHMNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40240			nodulin MtN21 /EamA-like trans...		Potri.015G073200 [exp]	0	1
					Potri.005G130601 [exp]	2.64	0.8053
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Potri.004G055000 [exp]	3.16	0.7774
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127500 [exp]	3.60	0.7529
AT5G63520			unknown protein		Potri.015G098700 [exp]	4.00	0.8043
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Potri.006G091800 [exp]	4.89	0.7805
AT1G18440			Peptidyl-tRNA hydrolase family...		Potri.012G061100 [exp]	11.22	0.7617
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Potri.015G141100 [exp]	13.41	0.7568
AT4G04320			malonyl-CoA decarboxylase fami...		Potri.011G010400 [exp]	14.79	0.7876
AT4G16360			5'-AMP-activated protein kinas...		Potri.014G167400 [exp]	16.73	0.7610
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	18.97	0.7570	Pt-HDA9.2,HDA904

Compare expression of checked genes

Potri.015G073200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.