Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 342 / 9e-109 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 292 / 1e-89 leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G48480 291 / 2e-89 RKL1 receptor-like kinase 1 (.1) AT1G60630 285 / 3e-87 Leucine-rich repeat protein kinase family protein (.1) AT1G64210 280 / 3e-86 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 278 / 1e-84 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 276 / 4e-84 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G10850 273 / 1e-82 Leucine-rich repeat protein kinase family protein (.1) AT3G17840 271 / 4e-82 RLK902 receptor-like kinase 902 (.1) AT2G36570 266 / 9e-80 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G078100 [exp] 920 / 0 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 339 / 6e-108 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G062100 [exp] 289 / 3e-88 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G136100 [exp] 286 / 8e-88 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 285 / 2e-87 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 283 / 8e-87 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.017G130600 [exp] 279 / 2e-85 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.010G097200 [exp] 275 / 1e-83 AT1G10850 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.018G002600 [exp] 267 / 1e-80 AT3G20190 540 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002360 [exp] 654 / 0 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 642 / 0 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10032162 [exp] 526 / 2e-180 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10014525 [exp] 526 / 4e-180 AT2G26730 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10039422 [exp] 515 / 4e-176 AT5G58300 306 / 3e-95 Leucine-rich repeat protein kinase family protein (.1.2) Lus10039483 [exp] 407 / 7e-135 AT5G58300 241 / 5e-71 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017756 [exp] 317 / 4e-99 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10010973 [exp] 290 / 2e-89 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 290 / 3e-89 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10004040 [exp] 286 / 1e-87 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.015G073500.1 pacid=42776678 polypeptide=Potri.015G073500.1.p locus=Potri.015G073500 ID=Potri.015G073500.1.v4.1 annot-version=v4.1 ATGGATCGAATTCTTATCTGGATGCTCCCCATTTTGATGTTTTTCATACTTCCAAAGTCAAATTCAGAAGATGAAAATGTCATTGAGGCACTGGTGCAAT TCATGGAGAAACTTTCAGCAGGAAATTCGCAAAATTATCAAAATTGGGGCTGGGACAGAAATTCAGATCCCTGCGTTGGCAATGTCAATTTCGTTGGCAC ATGGAAAGGAGTGGACTGCAAGAAATCGCAAAATGTTAAGAAGATTGTTCTTGATAACTTCAACTTAACAGGAACATTTGAGGCTGCTTTCGTATGCACG GCGAAGTTTCTTGTTTTCTTGAGCCTGAAAGAGAACAATATTTCTGGCTTCATGCCTAAAGAGATAGGAAACTGCGGACGTCTGAGACACTTGTACGTAA AAGGGAACCGATTTGCTGGTGATATTCCTGACACTTTTCCTCAGTTACGTAAGTTGAAGAGCATCGATATATCTGACAACAACTTCTCTGGTGAGCTTCC TGCTGATATGTCCCGGATTTCAGGCCTGCTAACCTTCTTTGCTGAAAACAATCAGCTCAGTGGGGAAATACCGGATTTTGATTTCTCCTATCTCAAGGAT TTCAATGTAGCCAACAACAACTTTAGCGGTCCAATTCCTGATGTCAAAGGCAAGTTTGGGGCAGACAGCTTCTCAGGTAATCCTGAATTATGTGGGAAAC CATTATCAAAAGCCTGCCCACCTTCAAAAAAAGGATCAAAGCATTCATCAACTGATCGCTTCCTTATCTACTCAGGCTATATAATACTTGCCGTGGTTGT GCTGCTCTTGTTAGCTTTATATTTATTTAAGAAAAATAAGCCTAAAGAAGAAACTGCGAAGGTTGTCAAGAAGGGGAGGGTAGCTAATGCAAGTAAGGAA CATAGTAGTACTCCAAGTGAATCCAAAACTGGTGGTAATAGATCAGAATATTCAATTGCATCTGTTGAAGCTGGCATGACATCATCATCTCTTGTAGTTC TTCCCAGTCCTGTGGTGAATGGTTTGAAATTCGAGGACTTGCTTCGAGCTCCAGCTGAGTTGCTTGGTAGAGGAAAGCATGGAAGTTTGTATAAGGTCAT GTTCGATAATGCTACGATCTTGGCAGTGAAAAGGATCAAAGACTGGGATATTTCGGCCGCAGATTTCAAGAGGAGAATGGAGATGATAGACCAAGTGAGG CATCCCAGAGTATTGCCTCCGGTAGCATTTTATTGCTCCAAGCAAGAGAAGCTCCTGGTATACGAGTATCAGCAGAATGGCAGTCTCTTCAAACTTCTCC ATGGGTCCCAGAATGGGCGAGTATTTGACTGGGGAAGCAGACTCAATGTCGCAGCTAGTATTGCAGAGTCCTTAGCATTCATGCATGAGCAGCTTCAAGA AGGTGGGATTGCCCACGGGAACCTGAAATCCACCAACATTTTATTCAACAAGAACATGGAGCCCTGCATTAGTGAATATGGTCTAATTGTGGCTCAAGGC CAGGATCAATCATTCCTTTCTCAGTCTGATAGCTTCAAAAGTAATGCTTTGGGTGGAGATGGCGCCTATAGCACCTTCAAGGTGGATGTTTATGGCTTTG GCGTGGTTCTTCTTGAGCTTTTGACAGGGAAACTAGTCGAAAACAATGGGTTTGATCTGGCAAGTTGGGTGCACTCAGTGGTTAGAGAAGAATGGACTGC TGAAGTTTTTGACAGGGCCTTGATCGCAGAAGGTGCTAGTGAGGAGAGGATGGTGAACCTGTTGCAGGTAGCATTGAAGTGCATAAATCCGTCTCCAAAT GAAAGGCCAGCCATAAACCAAATATCTGCTATGATAAACACGATAAAAGAGGATGAAGAGAGATCCATAATTTCAGAACCATGA
AA sequence Show only first row Show all	>Potri.015G073500.1 pacid=42776678 polypeptide=Potri.015G073500.1.p locus=Potri.015G073500 ID=Potri.015G073500.1.v4.1 annot-version=v4.1 MDRILIWMLPILMFFILPKSNSEDENVIEALVQFMEKLSAGNSQNYQNWGWDRNSDPCVGNVNFVGTWKGVDCKKSQNVKKIVLDNFNLTGTFEAAFVCT AKFLVFLSLKENNISGFMPKEIGNCGRLRHLYVKGNRFAGDIPDTFPQLRKLKSIDISDNNFSGELPADMSRISGLLTFFAENNQLSGEIPDFDFSYLKD FNVANNNFSGPIPDVKGKFGADSFSGNPELCGKPLSKACPPSKKGSKHSSTDRFLIYSGYIILAVVVLLLLALYLFKKNKPKEETAKVVKKGRVANASKE HSSTPSESKTGGNRSEYSIASVEAGMTSSSLVVLPSPVVNGLKFEDLLRAPAELLGRGKHGSLYKVMFDNATILAVKRIKDWDISAADFKRRMEMIDQVR HPRVLPPVAFYCSKQEKLLVYEYQQNGSLFKLLHGSQNGRVFDWGSRLNVAASIAESLAFMHEQLQEGGIAHGNLKSTNILFNKNMEPCISEYGLIVAQG QDQSFLSQSDSFKSNALGGDGAYSTFKVDVYGFGVVLLELLTGKLVENNGFDLASWVHSVVREEWTAEVFDRALIAEGASEERMVNLLQVALKCINPSPN ERPAINQISAMINTIKEDEERSIISEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26730			Leucine-rich repeat protein ki...		Potri.015G073500 [exp]	0	1
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Potri.006G190800 [exp]	10.72	0.9754
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Potri.008G031500 [exp]	13.19	0.9732
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	20.63	0.9726
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G216000 [exp]	22.80	0.9720	3
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	25.88	0.9719
AT5G59090		ATSBT4.12	subtilase 4.12 (.1.2.3)		Potri.012G133200 [exp]	28.14	0.9713
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	31.30	0.9709
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	32.86	0.9708	PtrAMT4-2
					Potri.005G224300 [exp]	36.98	0.9707
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000400 [exp]	38.20	0.9703	MALD1.1

Compare expression of checked genes

Potri.015G073500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.